Protein–RNA interactions for Protein: Q9H347

UBQLN3, Ubiquilin-3, humanhuman

Predictions only

Length 655 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN3Q9H347 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
UBQLN3Q9H347 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
UBQLN3Q9H347 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
UBQLN3Q9H347 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
UBQLN3Q9H347 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC14.88□□□□□ -0.03
UBQLN3Q9H347 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC14.87□□□□□ -0.03
UBQLN3Q9H347 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
UBQLN3Q9H347 AL592424.1-201ENST00000563624 1536 ntBASIC14.87□□□□□ -0.03
UBQLN3Q9H347 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
UBQLN3Q9H347 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC14.87□□□□□ -0.03
UBQLN3Q9H347 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
UBQLN3Q9H347 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
UBQLN3Q9H347 FES-204ENST00000414248 2327 ntTSL 2 BASIC14.87□□□□□ -0.03
UBQLN3Q9H347 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
UBQLN3Q9H347 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC14.87□□□□□ -0.03
UBQLN3Q9H347 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
UBQLN3Q9H347 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
UBQLN3Q9H347 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
UBQLN3Q9H347 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
UBQLN3Q9H347 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
UBQLN3Q9H347 WRB-204ENST00000398753 699 ntTSL 3 BASIC14.87□□□□□ -0.03
UBQLN3Q9H347 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
UBQLN3Q9H347 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC14.87□□□□□ -0.03
UBQLN3Q9H347 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC14.87□□□□□ -0.03
UBQLN3Q9H347 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC14.87□□□□□ -0.03
UBQLN3Q9H347 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC14.87□□□□□ -0.03
UBQLN3Q9H347 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC14.87□□□□□ -0.03
UBQLN3Q9H347 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC14.87□□□□□ -0.03
UBQLN3Q9H347 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
UBQLN3Q9H347 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
UBQLN3Q9H347 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
UBQLN3Q9H347 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC14.87□□□□□ -0.03
UBQLN3Q9H347 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
UBQLN3Q9H347 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
UBQLN3Q9H347 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
UBQLN3Q9H347 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
UBQLN3Q9H347 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
UBQLN3Q9H347 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
UBQLN3Q9H347 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
UBQLN3Q9H347 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
UBQLN3Q9H347 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
UBQLN3Q9H347 AL589702.1-201ENST00000641229 1509 ntBASIC14.87□□□□□ -0.03
UBQLN3Q9H347 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
UBQLN3Q9H347 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
UBQLN3Q9H347 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
UBQLN3Q9H347 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
UBQLN3Q9H347 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC14.86□□□□□ -0.03
UBQLN3Q9H347 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
UBQLN3Q9H347 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
UBQLN3Q9H347 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
UBQLN3Q9H347 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
UBQLN3Q9H347 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC14.86□□□□□ -0.03
UBQLN3Q9H347 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC14.86□□□□□ -0.03
UBQLN3Q9H347 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
UBQLN3Q9H347 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC14.86□□□□□ -0.03
UBQLN3Q9H347 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC14.86□□□□□ -0.03
UBQLN3Q9H347 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
UBQLN3Q9H347 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
UBQLN3Q9H347 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC14.86□□□□□ -0.03
UBQLN3Q9H347 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
UBQLN3Q9H347 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
UBQLN3Q9H347 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC14.86□□□□□ -0.03
UBQLN3Q9H347 AC125807.1-201ENST00000483097 614 ntBASIC14.86□□□□□ -0.03
UBQLN3Q9H347 AC140878.1-201ENST00000565277 250 ntBASIC14.86□□□□□ -0.03
UBQLN3Q9H347 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC14.86□□□□□ -0.03
UBQLN3Q9H347 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC14.86□□□□□ -0.03
UBQLN3Q9H347 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
UBQLN3Q9H347 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC14.86□□□□□ -0.03
UBQLN3Q9H347 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
UBQLN3Q9H347 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC14.86□□□□□ -0.03
UBQLN3Q9H347 SLC9A7P1-201ENST00000554295 3311 ntBASIC14.86□□□□□ -0.03
UBQLN3Q9H347 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
UBQLN3Q9H347 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
UBQLN3Q9H347 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC14.86□□□□□ -0.03
UBQLN3Q9H347 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
UBQLN3Q9H347 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
UBQLN3Q9H347 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
UBQLN3Q9H347 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC14.86□□□□□ -0.03
UBQLN3Q9H347 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC14.86□□□□□ -0.03
UBQLN3Q9H347 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC14.86□□□□□ -0.03
UBQLN3Q9H347 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
UBQLN3Q9H347 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
UBQLN3Q9H347 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
UBQLN3Q9H347 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
UBQLN3Q9H347 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC14.86□□□□□ -0.03
UBQLN3Q9H347 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
UBQLN3Q9H347 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
UBQLN3Q9H347 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
UBQLN3Q9H347 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
UBQLN3Q9H347 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
UBQLN3Q9H347 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC14.85□□□□□ -0.03
UBQLN3Q9H347 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
UBQLN3Q9H347 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
UBQLN3Q9H347 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
UBQLN3Q9H347 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
UBQLN3Q9H347 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
UBQLN3Q9H347 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
UBQLN3Q9H347 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC14.85□□□□□ -0.03
UBQLN3Q9H347 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
UBQLN3Q9H347 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms