Protein–RNA interactions for Protein: Q99618

CDCA3, Cell division cycle-associated protein 3, humanhuman

Predicted RBP Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3Q99618 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDCA3Q99618 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CDCA3Q99618 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDCA3Q99618 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC16.44■□□□□ 0.22
CDCA3Q99618 MIR1202-201ENST00000408529 83 ntBASIC16.44■□□□□ 0.22
CDCA3Q99618 KRTAP10-13P-201ENST00000412914 571 ntBASIC16.44■□□□□ 0.22
CDCA3Q99618 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC16.44■□□□□ 0.22
CDCA3Q99618 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDCA3Q99618 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC16.44■□□□□ 0.22
CDCA3Q99618 RPSAP36-202ENST00000494591 1261 ntBASIC16.44■□□□□ 0.22
CDCA3Q99618 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC16.44■□□□□ 0.22
CDCA3Q99618 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CDCA3Q99618 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC16.44■□□□□ 0.22
CDCA3Q99618 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC16.44■□□□□ 0.22
CDCA3Q99618 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC16.44■□□□□ 0.22
CDCA3Q99618 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC16.44■□□□□ 0.22
CDCA3Q99618 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC16.44■□□□□ 0.22
CDCA3Q99618 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC16.44■□□□□ 0.22
CDCA3Q99618 NAT9-222ENST00000583476 583 ntTSL 3 BASIC16.44■□□□□ 0.22
CDCA3Q99618 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CDCA3Q99618 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC16.44■□□□□ 0.22
CDCA3Q99618 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC16.44■□□□□ 0.22
CDCA3Q99618 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDCA3Q99618 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC16.44■□□□□ 0.22
CDCA3Q99618 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDCA3Q99618 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC16.44■□□□□ 0.22
CDCA3Q99618 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CDCA3Q99618 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
CDCA3Q99618 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC16.44■□□□□ 0.22
CDCA3Q99618 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDCA3Q99618 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDCA3Q99618 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
CDCA3Q99618 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDCA3Q99618 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDCA3Q99618 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CDCA3Q99618 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC16.44■□□□□ 0.22
CDCA3Q99618 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CDCA3Q99618 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDCA3Q99618 FOS-202ENST00000535987 1402 ntTSL 2 BASIC16.44■□□□□ 0.22
CDCA3Q99618 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDCA3Q99618 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDCA3Q99618 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CDCA3Q99618 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC16.44■□□□□ 0.22
CDCA3Q99618 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CDCA3Q99618 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDCA3Q99618 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
CDCA3Q99618 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
CDCA3Q99618 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDCA3Q99618 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDCA3Q99618 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC16.43■□□□□ 0.22
CDCA3Q99618 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC16.43■□□□□ 0.22
CDCA3Q99618 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC16.43■□□□□ 0.22
CDCA3Q99618 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
CDCA3Q99618 PTPA-218ENST00000435132 618 ntTSL 2 BASIC16.43■□□□□ 0.22
CDCA3Q99618 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC16.43■□□□□ 0.22
CDCA3Q99618 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC16.43■□□□□ 0.22
CDCA3Q99618 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC16.43■□□□□ 0.22
CDCA3Q99618 DIO1-215ENST00000610607 796 ntTSL 5 BASIC16.43■□□□□ 0.22
CDCA3Q99618 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC16.43■□□□□ 0.22
CDCA3Q99618 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDCA3Q99618 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDCA3Q99618 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CDCA3Q99618 BANP-227ENST00000626016 2144 ntTSL 2 BASIC16.43■□□□□ 0.22
CDCA3Q99618 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDCA3Q99618 AL138799.1-201ENST00000448213 1675 ntBASIC16.43■□□□□ 0.22
CDCA3Q99618 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDCA3Q99618 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CDCA3Q99618 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDCA3Q99618 AC078925.2-201ENST00000624013 1973 ntBASIC16.42■□□□□ 0.22
CDCA3Q99618 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CDCA3Q99618 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC16.42■□□□□ 0.22
CDCA3Q99618 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
CDCA3Q99618 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC16.42■□□□□ 0.22
CDCA3Q99618 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDCA3Q99618 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CDCA3Q99618 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDCA3Q99618 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDCA3Q99618 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDCA3Q99618 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
CDCA3Q99618 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CDCA3Q99618 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDCA3Q99618 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC16.42■□□□□ 0.22
CDCA3Q99618 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC16.42■□□□□ 0.22
CDCA3Q99618 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC16.42■□□□□ 0.22
CDCA3Q99618 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC16.42■□□□□ 0.22
CDCA3Q99618 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC16.42■□□□□ 0.22
CDCA3Q99618 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC16.42■□□□□ 0.22
CDCA3Q99618 ACTG1P17-201ENST00000558391 1119 ntBASIC16.42■□□□□ 0.22
CDCA3Q99618 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC16.42■□□□□ 0.22
CDCA3Q99618 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC16.42■□□□□ 0.22
CDCA3Q99618 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC16.42■□□□□ 0.22
CDCA3Q99618 RN7SL48P-201ENST00000579283 293 ntBASIC16.42■□□□□ 0.22
CDCA3Q99618 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC16.42■□□□□ 0.22
CDCA3Q99618 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC16.42■□□□□ 0.22
CDCA3Q99618 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
CDCA3Q99618 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC16.42■□□□□ 0.22
CDCA3Q99618 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDCA3Q99618 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CDCA3Q99618 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
CDCA3Q99618 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 58.2 ms