Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC54Q8NEL0 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
CCDC54Q8NEL0 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
CCDC54Q8NEL0 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC14.04□□□□□ -0.16
CCDC54Q8NEL0 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC54Q8NEL0 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC54Q8NEL0 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC54Q8NEL0 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC14.04□□□□□ -0.16
CCDC54Q8NEL0 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC54Q8NEL0 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC54Q8NEL0 DKFZP434H168-201ENST00000567381 1905 ntBASIC14.03□□□□□ -0.16
CCDC54Q8NEL0 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC54Q8NEL0 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
CCDC54Q8NEL0 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC14.03□□□□□ -0.16
CCDC54Q8NEL0 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC54Q8NEL0 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC54Q8NEL0 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
CCDC54Q8NEL0 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC54Q8NEL0 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC54Q8NEL0 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC54Q8NEL0 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC54Q8NEL0 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC14.03□□□□□ -0.16
CCDC54Q8NEL0 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC14.03□□□□□ -0.16
CCDC54Q8NEL0 AC002056.1-201ENST00000395613 760 ntBASIC14.03□□□□□ -0.16
CCDC54Q8NEL0 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC54Q8NEL0 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC14.03□□□□□ -0.16
CCDC54Q8NEL0 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC14.03□□□□□ -0.16
CCDC54Q8NEL0 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC14.03□□□□□ -0.16
CCDC54Q8NEL0 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
CCDC54Q8NEL0 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC14.03□□□□□ -0.16
CCDC54Q8NEL0 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC14.03□□□□□ -0.16
CCDC54Q8NEL0 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC54Q8NEL0 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC54Q8NEL0 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
CCDC54Q8NEL0 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
CCDC54Q8NEL0 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC14.03□□□□□ -0.16
CCDC54Q8NEL0 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC14.03□□□□□ -0.16
CCDC54Q8NEL0 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC14.03□□□□□ -0.16
CCDC54Q8NEL0 AL049840.3-201ENST00000602669 611 ntBASIC14.03□□□□□ -0.16
CCDC54Q8NEL0 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC14.03□□□□□ -0.16
CCDC54Q8NEL0 REM2-202ENST00000536884 1331 ntTSL 2 BASIC14.03□□□□□ -0.16
CCDC54Q8NEL0 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC14.03□□□□□ -0.16
CCDC54Q8NEL0 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC14.03□□□□□ -0.16
CCDC54Q8NEL0 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC14.03□□□□□ -0.16
CCDC54Q8NEL0 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC54Q8NEL0 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC54Q8NEL0 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC54Q8NEL0 AC104640.1-201ENST00000562617 2109 ntBASIC14.03□□□□□ -0.16
CCDC54Q8NEL0 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC54Q8NEL0 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC14.03□□□□□ -0.16
CCDC54Q8NEL0 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC54Q8NEL0 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC14.03□□□□□ -0.16
CCDC54Q8NEL0 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC54Q8NEL0 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
CCDC54Q8NEL0 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC14.03□□□□□ -0.16
CCDC54Q8NEL0 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
CCDC54Q8NEL0 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC54Q8NEL0 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC54Q8NEL0 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC54Q8NEL0 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC54Q8NEL0 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC54Q8NEL0 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC14.02□□□□□ -0.16
CCDC54Q8NEL0 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
CCDC54Q8NEL0 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC54Q8NEL0 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC14.02□□□□□ -0.16
CCDC54Q8NEL0 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC54Q8NEL0 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC14.02□□□□□ -0.16
CCDC54Q8NEL0 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
CCDC54Q8NEL0 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC14.02□□□□□ -0.16
CCDC54Q8NEL0 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
CCDC54Q8NEL0 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC54Q8NEL0 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC54Q8NEL0 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC54Q8NEL0 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC54Q8NEL0 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC54Q8NEL0 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC14.02□□□□□ -0.16
CCDC54Q8NEL0 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
CCDC54Q8NEL0 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC54Q8NEL0 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC14.02□□□□□ -0.16
CCDC54Q8NEL0 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC54Q8NEL0 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
CCDC54Q8NEL0 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC14.02□□□□□ -0.17
CCDC54Q8NEL0 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC54Q8NEL0 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
CCDC54Q8NEL0 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC14.02□□□□□ -0.17
CCDC54Q8NEL0 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC14.02□□□□□ -0.17
CCDC54Q8NEL0 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC54Q8NEL0 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC14.02□□□□□ -0.17
CCDC54Q8NEL0 RNA5SP419-201ENST00000515908 135 ntBASIC14.02□□□□□ -0.17
CCDC54Q8NEL0 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC54Q8NEL0 PENK-208ENST00000523051 772 ntTSL 5 BASIC14.02□□□□□ -0.17
CCDC54Q8NEL0 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC14.02□□□□□ -0.17
CCDC54Q8NEL0 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC14.02□□□□□ -0.17
CCDC54Q8NEL0 AC145285.3-201ENST00000564603 959 ntBASIC14.02□□□□□ -0.17
CCDC54Q8NEL0 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC54Q8NEL0 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC54Q8NEL0 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC54Q8NEL0 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC14.02□□□□□ -0.17
CCDC54Q8NEL0 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
CCDC54Q8NEL0 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 64.5 ms