Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
CSMD3Q7Z407 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
CSMD3Q7Z407 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC10.93□□□□□ -0.66
CSMD3Q7Z407 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC10.93□□□□□ -0.66
CSMD3Q7Z407 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC10.93□□□□□ -0.66
CSMD3Q7Z407 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
CSMD3Q7Z407 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
CSMD3Q7Z407 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC10.93□□□□□ -0.66
CSMD3Q7Z407 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
CSMD3Q7Z407 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC10.93□□□□□ -0.66
CSMD3Q7Z407 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC10.93□□□□□ -0.66
CSMD3Q7Z407 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
CSMD3Q7Z407 PARVG-202ENST00000415224 999 ntTSL 2 BASIC10.93□□□□□ -0.66
CSMD3Q7Z407 USP40-206ENST00000443711 628 ntTSL 2 BASIC10.93□□□□□ -0.66
CSMD3Q7Z407 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC10.93□□□□□ -0.66
CSMD3Q7Z407 ACR-203ENST00000529621 708 ntTSL 5 BASIC10.93□□□□□ -0.66
CSMD3Q7Z407 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC10.93□□□□□ -0.66
CSMD3Q7Z407 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC10.93□□□□□ -0.66
CSMD3Q7Z407 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC10.93□□□□□ -0.66
CSMD3Q7Z407 AC091812.3-201ENST00000621362 345 ntBASIC10.93□□□□□ -0.66
CSMD3Q7Z407 AC079336.7-201ENST00000623428 1078 ntBASIC10.93□□□□□ -0.66
CSMD3Q7Z407 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC10.93□□□□□ -0.66
CSMD3Q7Z407 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
CSMD3Q7Z407 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
CSMD3Q7Z407 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
CSMD3Q7Z407 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
CSMD3Q7Z407 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
CSMD3Q7Z407 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC10.93□□□□□ -0.66
CSMD3Q7Z407 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
CSMD3Q7Z407 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC10.93□□□□□ -0.66
CSMD3Q7Z407 OS9-205ENST00000413095 1660 ntTSL 2 BASIC10.93□□□□□ -0.66
CSMD3Q7Z407 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC10.93□□□□□ -0.66
CSMD3Q7Z407 AL691432.1-201ENST00000596308 1422 ntBASIC10.93□□□□□ -0.66
CSMD3Q7Z407 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
CSMD3Q7Z407 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
CSMD3Q7Z407 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
CSMD3Q7Z407 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
CSMD3Q7Z407 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC10.93□□□□□ -0.66
CSMD3Q7Z407 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
CSMD3Q7Z407 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
CSMD3Q7Z407 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
CSMD3Q7Z407 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC10.93□□□□□ -0.66
CSMD3Q7Z407 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
CSMD3Q7Z407 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC10.93□□□□□ -0.66
CSMD3Q7Z407 AC022217.1-201ENST00000521069 738 ntBASIC10.93□□□□□ -0.66
CSMD3Q7Z407 AC005730.2-201ENST00000564549 1184 ntBASIC10.93□□□□□ -0.66
CSMD3Q7Z407 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC10.93□□□□□ -0.66
CSMD3Q7Z407 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC10.93□□□□□ -0.66
CSMD3Q7Z407 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
CSMD3Q7Z407 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
CSMD3Q7Z407 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CSMD3Q7Z407 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC10.92□□□□□ -0.66
CSMD3Q7Z407 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CSMD3Q7Z407 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC10.92□□□□□ -0.66
CSMD3Q7Z407 MIR1202-201ENST00000408529 83 ntBASIC10.92□□□□□ -0.66
CSMD3Q7Z407 HLA-DQB2-229ENST00000411527 1059 ntBASIC10.92□□□□□ -0.66
CSMD3Q7Z407 DEF8-202ENST00000418391 852 ntTSL 2 BASIC10.92□□□□□ -0.66
CSMD3Q7Z407 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC10.92□□□□□ -0.66
CSMD3Q7Z407 AC245884.6-201ENST00000515672 1067 ntBASIC10.92□□□□□ -0.66
CSMD3Q7Z407 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC10.92□□□□□ -0.66
CSMD3Q7Z407 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC10.92□□□□□ -0.66
CSMD3Q7Z407 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CSMD3Q7Z407 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
CSMD3Q7Z407 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
CSMD3Q7Z407 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CSMD3Q7Z407 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC10.92□□□□□ -0.66
CSMD3Q7Z407 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CSMD3Q7Z407 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CSMD3Q7Z407 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
CSMD3Q7Z407 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CSMD3Q7Z407 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC10.92□□□□□ -0.66
CSMD3Q7Z407 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC10.92□□□□□ -0.66
CSMD3Q7Z407 ARTN-209ENST00000479128 471 ntTSL 3 BASIC10.92□□□□□ -0.66
CSMD3Q7Z407 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
CSMD3Q7Z407 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
CSMD3Q7Z407 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC10.92□□□□□ -0.66
CSMD3Q7Z407 CSH2-206ENST00000560142 749 ntTSL 5 BASIC10.92□□□□□ -0.66
CSMD3Q7Z407 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC10.92□□□□□ -0.66
CSMD3Q7Z407 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
CSMD3Q7Z407 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
CSMD3Q7Z407 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC10.92□□□□□ -0.66
CSMD3Q7Z407 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CSMD3Q7Z407 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC10.92□□□□□ -0.66
CSMD3Q7Z407 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC10.92□□□□□ -0.66
CSMD3Q7Z407 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC10.92□□□□□ -0.66
CSMD3Q7Z407 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC10.92□□□□□ -0.66
CSMD3Q7Z407 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC10.92□□□□□ -0.66
CSMD3Q7Z407 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CSMD3Q7Z407 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC10.92□□□□□ -0.66
CSMD3Q7Z407 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
CSMD3Q7Z407 RNA5SP486-201ENST00000515961 83 ntBASIC10.92□□□□□ -0.66
CSMD3Q7Z407 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC10.92□□□□□ -0.66
CSMD3Q7Z407 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC10.92□□□□□ -0.66
CSMD3Q7Z407 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC10.92□□□□□ -0.66
CSMD3Q7Z407 AC097359.3-201ENST00000603982 1210 ntBASIC10.92□□□□□ -0.66
CSMD3Q7Z407 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Retrieved 100 of 98,524 protein–RNA pairs in 53.2 ms