Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
HOXA1P49639 AC005912.2-201ENST00000619492 2400 ntBASIC13.4□□□□□ -0.26
HOXA1P49639 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
HOXA1P49639 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC13.4□□□□□ -0.26
HOXA1P49639 LINC01101-201ENST00000622953 1884 ntBASIC13.4□□□□□ -0.26
HOXA1P49639 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.27
HOXA1P49639 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.27
HOXA1P49639 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC13.39□□□□□ -0.27
HOXA1P49639 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC13.39□□□□□ -0.27
HOXA1P49639 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HOXA1P49639 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
HOXA1P49639 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HOXA1P49639 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
HOXA1P49639 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HOXA1P49639 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC13.39□□□□□ -0.27
HOXA1P49639 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HOXA1P49639 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HOXA1P49639 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC13.39□□□□□ -0.27
HOXA1P49639 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
HOXA1P49639 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
HOXA1P49639 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HOXA1P49639 DSN1-207ENST00000448110 2129 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
HOXA1P49639 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HOXA1P49639 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HOXA1P49639 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC13.39□□□□□ -0.27
HOXA1P49639 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
HOXA1P49639 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC13.39□□□□□ -0.27
HOXA1P49639 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
HOXA1P49639 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC13.39□□□□□ -0.27
HOXA1P49639 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
HOXA1P49639 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC13.39□□□□□ -0.27
HOXA1P49639 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HOXA1P49639 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC13.39□□□□□ -0.27
HOXA1P49639 PNN-202ENST00000553331 656 ntTSL 3 BASIC13.39□□□□□ -0.27
HOXA1P49639 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC13.39□□□□□ -0.27
HOXA1P49639 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC13.39□□□□□ -0.27
HOXA1P49639 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
HOXA1P49639 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HOXA1P49639 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC13.39□□□□□ -0.27
HOXA1P49639 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HOXA1P49639 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
HOXA1P49639 SLC23A1-201ENST00000348729 2299 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
HOXA1P49639 AC006449.6-201ENST00000612330 2296 ntBASIC13.39□□□□□ -0.27
HOXA1P49639 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HOXA1P49639 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
HOXA1P49639 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
HOXA1P49639 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HOXA1P49639 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HOXA1P49639 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC13.39□□□□□ -0.27
HOXA1P49639 GGT4P-201ENST00000623672 1708 ntBASIC13.39□□□□□ -0.27
HOXA1P49639 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HOXA1P49639 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
HOXA1P49639 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HOXA1P49639 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
HOXA1P49639 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXA1P49639 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
HOXA1P49639 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXA1P49639 ALDH3A2-226ENST00000631291 3822 ntTSL 5 BASIC13.38□□□□□ -0.27
HOXA1P49639 ROPN1B-202ENST00000504401 2050 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HOXA1P49639 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC13.38□□□□□ -0.27
HOXA1P49639 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HOXA1P49639 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXA1P49639 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXA1P49639 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
HOXA1P49639 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC13.38□□□□□ -0.27
HOXA1P49639 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HOXA1P49639 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXA1P49639 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HOXA1P49639 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HOXA1P49639 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXA1P49639 C1R-201ENST00000535233 2211 ntTSL 2 BASIC13.38□□□□□ -0.27
HOXA1P49639 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXA1P49639 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXA1P49639 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HOXA1P49639 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXA1P49639 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC13.38□□□□□ -0.27
HOXA1P49639 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXA1P49639 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXA1P49639 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HOXA1P49639 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC13.38□□□□□ -0.27
HOXA1P49639 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
HOXA1P49639 AL139424.1-201ENST00000607572 797 ntBASIC13.38□□□□□ -0.27
HOXA1P49639 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXA1P49639 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXA1P49639 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXA1P49639 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXA1P49639 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC13.38□□□□□ -0.27
HOXA1P49639 SP100-205ENST00000409824 1802 ntTSL 5 BASIC13.38□□□□□ -0.27
HOXA1P49639 DLG4-203ENST00000399510 3975 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HOXA1P49639 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXA1P49639 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HOXA1P49639 AC027612.1-201ENST00000445234 2395 ntBASIC13.38□□□□□ -0.27
HOXA1P49639 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
HOXA1P49639 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC13.38□□□□□ -0.27
HOXA1P49639 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
HOXA1P49639 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXA1P49639 RNF216-202ENST00000389902 3293 ntAPPRIS P4 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXA1P49639 DLX3-201ENST00000434704 2602 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXA1P49639 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HOXA1P49639 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms