Protein–RNA interactions for Protein: P40939

HADHA, Trifunctional enzyme subunit alpha, mitochondrial, humanhuman

Predictions only

Length 763 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HADHAP40939 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HADHAP40939 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
HADHAP40939 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC16.25■□□□□ 0.19
HADHAP40939 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
HADHAP40939 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HADHAP40939 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC16.25■□□□□ 0.19
HADHAP40939 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
HADHAP40939 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC16.25■□□□□ 0.19
HADHAP40939 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HADHAP40939 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
HADHAP40939 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC16.25■□□□□ 0.19
HADHAP40939 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
HADHAP40939 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
HADHAP40939 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HADHAP40939 FAM220BP-201ENST00000377689 816 ntBASIC16.25■□□□□ 0.19
HADHAP40939 AC211486.1-202ENST00000416371 468 ntBASIC16.25■□□□□ 0.19
HADHAP40939 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC16.25■□□□□ 0.19
HADHAP40939 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HADHAP40939 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC16.25■□□□□ 0.19
HADHAP40939 AC092183.1-201ENST00000469884 875 ntBASIC16.25■□□□□ 0.19
HADHAP40939 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC16.25■□□□□ 0.19
HADHAP40939 AC211476.1-201ENST00000503899 468 ntBASIC16.25■□□□□ 0.19
HADHAP40939 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC16.25■□□□□ 0.19
HADHAP40939 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC16.25■□□□□ 0.19
HADHAP40939 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HADHAP40939 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC16.25■□□□□ 0.19
HADHAP40939 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC16.25■□□□□ 0.19
HADHAP40939 TSFM-210ENST00000550559 897 ntTSL 5 BASIC16.25■□□□□ 0.19
HADHAP40939 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC16.25■□□□□ 0.19
HADHAP40939 SSH2-211ENST00000590153 570 ntTSL 4 BASIC16.25■□□□□ 0.19
HADHAP40939 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC16.25■□□□□ 0.19
HADHAP40939 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
HADHAP40939 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HADHAP40939 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HADHAP40939 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HADHAP40939 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC16.25■□□□□ 0.19
HADHAP40939 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HADHAP40939 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HADHAP40939 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC16.25■□□□□ 0.19
HADHAP40939 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
HADHAP40939 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HADHAP40939 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC16.25■□□□□ 0.19
HADHAP40939 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC16.25■□□□□ 0.19
HADHAP40939 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HADHAP40939 FOXO1B-201ENST00000504678 1527 ntBASIC16.24■□□□□ 0.19
HADHAP40939 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC16.24■□□□□ 0.19
HADHAP40939 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HADHAP40939 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
HADHAP40939 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC16.24■□□□□ 0.19
HADHAP40939 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC16.24■□□□□ 0.19
HADHAP40939 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
HADHAP40939 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HADHAP40939 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC16.24■□□□□ 0.19
HADHAP40939 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC16.24■□□□□ 0.19
HADHAP40939 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HADHAP40939 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC16.24■□□□□ 0.19
HADHAP40939 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC16.24■□□□□ 0.19
HADHAP40939 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HADHAP40939 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
HADHAP40939 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC16.24■□□□□ 0.19
HADHAP40939 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HADHAP40939 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC16.24■□□□□ 0.19
HADHAP40939 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC16.24■□□□□ 0.19
HADHAP40939 STOM-202ENST00000347359 870 ntTSL 2 BASIC16.24■□□□□ 0.19
HADHAP40939 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HADHAP40939 HLA-H-201ENST00000383620 1096 ntBASIC16.24■□□□□ 0.19
HADHAP40939 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC16.24■□□□□ 0.19
HADHAP40939 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC16.24■□□□□ 0.19
HADHAP40939 AC069335.1-201ENST00000489972 472 ntBASIC16.24■□□□□ 0.19
HADHAP40939 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC16.24■□□□□ 0.19
HADHAP40939 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC16.24■□□□□ 0.19
HADHAP40939 DHDH-204ENST00000523250 634 ntTSL 5 BASIC16.24■□□□□ 0.19
HADHAP40939 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC16.24■□□□□ 0.19
HADHAP40939 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HADHAP40939 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC16.24■□□□□ 0.19
HADHAP40939 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HADHAP40939 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC16.24■□□□□ 0.19
HADHAP40939 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HADHAP40939 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HADHAP40939 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HADHAP40939 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HADHAP40939 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HADHAP40939 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
HADHAP40939 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HADHAP40939 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HADHAP40939 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HADHAP40939 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC16.24■□□□□ 0.19
HADHAP40939 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
HADHAP40939 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HADHAP40939 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HADHAP40939 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HADHAP40939 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
HADHAP40939 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC16.23■□□□□ 0.19
HADHAP40939 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
HADHAP40939 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
HADHAP40939 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC16.23■□□□□ 0.19
HADHAP40939 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HADHAP40939 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HADHAP40939 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
HADHAP40939 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms