Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC15.5■□□□□ 0.07
HOXC4P09017 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
HOXC4P09017 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
HOXC4P09017 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
HOXC4P09017 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
HOXC4P09017 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HOXC4P09017 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
HOXC4P09017 AL121723.1-201ENST00000445194 1519 ntBASIC15.5■□□□□ 0.07
HOXC4P09017 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HOXC4P09017 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC15.5■□□□□ 0.07
HOXC4P09017 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC15.5■□□□□ 0.07
HOXC4P09017 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC15.5■□□□□ 0.07
HOXC4P09017 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
HOXC4P09017 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HOXC4P09017 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC15.5■□□□□ 0.07
HOXC4P09017 NAA50-208ENST00000497255 789 ntTSL 5 BASIC15.5■□□□□ 0.07
HOXC4P09017 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC15.5■□□□□ 0.07
HOXC4P09017 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
HOXC4P09017 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC15.5■□□□□ 0.07
HOXC4P09017 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC15.5■□□□□ 0.07
HOXC4P09017 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
HOXC4P09017 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
HOXC4P09017 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HOXC4P09017 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC15.5■□□□□ 0.07
HOXC4P09017 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
HOXC4P09017 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HOXC4P09017 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
HOXC4P09017 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC15.5■□□□□ 0.07
HOXC4P09017 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC15.5■□□□□ 0.07
HOXC4P09017 LTF-203ENST00000426532 2494 ntTSL 2 BASIC15.5■□□□□ 0.07
HOXC4P09017 AC112504.1-201ENST00000623415 1841 ntBASIC15.5■□□□□ 0.07
HOXC4P09017 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
HOXC4P09017 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
HOXC4P09017 HNRNPA1P48-201ENST00000562726 1377 ntBASIC15.49■□□□□ 0.07
HOXC4P09017 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
HOXC4P09017 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC15.49■□□□□ 0.07
HOXC4P09017 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC15.49■□□□□ 0.07
HOXC4P09017 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HOXC4P09017 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HOXC4P09017 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
HOXC4P09017 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
HOXC4P09017 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
HOXC4P09017 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
HOXC4P09017 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
HOXC4P09017 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
HOXC4P09017 GK-202ENST00000378941 458 ntTSL 3 BASIC15.49■□□□□ 0.07
HOXC4P09017 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC15.49■□□□□ 0.07
HOXC4P09017 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC15.49■□□□□ 0.07
HOXC4P09017 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
HOXC4P09017 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
HOXC4P09017 AC007389.4-201ENST00000454674 793 ntBASIC15.49■□□□□ 0.07
HOXC4P09017 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
HOXC4P09017 FUZ-207ENST00000526575 482 ntTSL 4 BASIC15.49■□□□□ 0.07
HOXC4P09017 PUDP-206ENST00000540122 825 ntTSL 2 BASIC15.49■□□□□ 0.07
HOXC4P09017 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC15.49■□□□□ 0.07
HOXC4P09017 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC15.49■□□□□ 0.07
HOXC4P09017 AC132938.2-201ENST00000579188 680 ntBASIC15.49■□□□□ 0.07
HOXC4P09017 AL162274.1-201ENST00000617191 1098 ntBASIC15.49■□□□□ 0.07
HOXC4P09017 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC15.49■□□□□ 0.07
HOXC4P09017 AL591163.1-201ENST00000641757 987 ntBASIC15.49■□□□□ 0.07
HOXC4P09017 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
HOXC4P09017 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HOXC4P09017 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC15.49■□□□□ 0.07
HOXC4P09017 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
HOXC4P09017 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC15.49■□□□□ 0.07
HOXC4P09017 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HOXC4P09017 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
HOXC4P09017 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC15.49■□□□□ 0.07
HOXC4P09017 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC15.49■□□□□ 0.07
HOXC4P09017 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
HOXC4P09017 PGR-209ENST00000617858 2816 ntTSL 5 BASIC15.49■□□□□ 0.07
HOXC4P09017 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HOXC4P09017 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
HOXC4P09017 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HOXC4P09017 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HOXC4P09017 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
HOXC4P09017 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
HOXC4P09017 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
HOXC4P09017 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HOXC4P09017 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
HOXC4P09017 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC15.48■□□□□ 0.07
HOXC4P09017 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
HOXC4P09017 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC15.48■□□□□ 0.07
HOXC4P09017 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC15.48■□□□□ 0.07
HOXC4P09017 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC15.48■□□□□ 0.07
HOXC4P09017 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HOXC4P09017 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HOXC4P09017 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HOXC4P09017 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
HOXC4P09017 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HOXC4P09017 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC15.48■□□□□ 0.07
HOXC4P09017 AC134915.1-201ENST00000426461 574 ntBASIC15.48■□□□□ 0.07
HOXC4P09017 AL162726.2-201ENST00000438986 1017 ntBASIC15.48■□□□□ 0.07
HOXC4P09017 PAM16-204ENST00000571941 674 ntTSL 3 BASIC15.48■□□□□ 0.07
HOXC4P09017 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC15.48■□□□□ 0.07
HOXC4P09017 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HOXC4P09017 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC15.48■□□□□ 0.07
HOXC4P09017 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
HOXC4P09017 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HOXC4P09017 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms