Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLIP3Q96DZ5 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
CLIP3Q96DZ5 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLIP3Q96DZ5 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLIP3Q96DZ5 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLIP3Q96DZ5 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLIP3Q96DZ5 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
CLIP3Q96DZ5 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC15.57■□□□□ 0.08
CLIP3Q96DZ5 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLIP3Q96DZ5 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
CLIP3Q96DZ5 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
CLIP3Q96DZ5 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC15.57■□□□□ 0.08
CLIP3Q96DZ5 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC15.57■□□□□ 0.08
CLIP3Q96DZ5 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CLIP3Q96DZ5 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC15.57■□□□□ 0.08
CLIP3Q96DZ5 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
CLIP3Q96DZ5 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC15.57■□□□□ 0.08
CLIP3Q96DZ5 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CLIP3Q96DZ5 THSD4-201ENST00000261862 3133 ntTSL 5 BASIC15.57■□□□□ 0.08
CLIP3Q96DZ5 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLIP3Q96DZ5 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 AC241585.1-201ENST00000433527 519 ntBASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 MTND6P24-201ENST00000440466 518 ntBASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 TSPY16P-201ENST00000449843 468 ntBASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 MAX-210ENST00000555419 765 ntTSL 5 BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 COQ4-205ENST00000609948 956 ntTSL 2 BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 GPAA1P2-202ENST00000606848 1787 ntBASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
CLIP3Q96DZ5 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CLIP3Q96DZ5 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
CLIP3Q96DZ5 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CLIP3Q96DZ5 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
CLIP3Q96DZ5 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CLIP3Q96DZ5 AC132872.4-202ENST00000622924 2756 ntBASIC15.55■□□□□ 0.08
CLIP3Q96DZ5 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CLIP3Q96DZ5 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CLIP3Q96DZ5 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CLIP3Q96DZ5 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
CLIP3Q96DZ5 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC15.55■□□□□ 0.08
CLIP3Q96DZ5 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC15.55■□□□□ 0.08
CLIP3Q96DZ5 AL031731.1-201ENST00000642131 2094 ntBASIC15.55■□□□□ 0.08
CLIP3Q96DZ5 GOLGA2P9-201ENST00000596977 1937 ntBASIC15.55■□□□□ 0.08
CLIP3Q96DZ5 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CLIP3Q96DZ5 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
CLIP3Q96DZ5 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC15.55■□□□□ 0.08
CLIP3Q96DZ5 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC15.55■□□□□ 0.08
CLIP3Q96DZ5 AL035456.1-201ENST00000456064 1369 ntBASIC15.55■□□□□ 0.08
CLIP3Q96DZ5 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CLIP3Q96DZ5 VMO1-203ENST00000416307 712 ntTSL 2 BASIC15.55■□□□□ 0.08
CLIP3Q96DZ5 AC092580.3-201ENST00000430932 139 ntBASIC15.55■□□□□ 0.08
CLIP3Q96DZ5 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC15.55■□□□□ 0.08
CLIP3Q96DZ5 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 56.7 ms