Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC18.62■□□□□ 0.57
CCDC144BQ3MJ40 AL589739.1-201ENST00000607720 493 ntBASIC18.62■□□□□ 0.57
CCDC144BQ3MJ40 AL844908.2-201ENST00000609461 460 ntBASIC18.62■□□□□ 0.57
CCDC144BQ3MJ40 AC008738.7-201ENST00000609744 511 ntBASIC18.62■□□□□ 0.57
CCDC144BQ3MJ40 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC144BQ3MJ40 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC18.62■□□□□ 0.57
CCDC144BQ3MJ40 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC144BQ3MJ40 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
CCDC144BQ3MJ40 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
CCDC144BQ3MJ40 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC144BQ3MJ40 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC18.62■□□□□ 0.57
CCDC144BQ3MJ40 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC144BQ3MJ40 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC144BQ3MJ40 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC144BQ3MJ40 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC144BQ3MJ40 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC144BQ3MJ40 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC144BQ3MJ40 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC144BQ3MJ40 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC144BQ3MJ40 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC144BQ3MJ40 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC144BQ3MJ40 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC144BQ3MJ40 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC144BQ3MJ40 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC144BQ3MJ40 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC144BQ3MJ40 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC144BQ3MJ40 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC144BQ3MJ40 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC144BQ3MJ40 GOLGA2P9-201ENST00000596977 1937 ntBASIC18.61■□□□□ 0.57
CCDC144BQ3MJ40 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC18.61■□□□□ 0.57
CCDC144BQ3MJ40 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC18.61■□□□□ 0.57
CCDC144BQ3MJ40 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC18.61■□□□□ 0.57
CCDC144BQ3MJ40 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC18.61■□□□□ 0.57
CCDC144BQ3MJ40 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC18.61■□□□□ 0.57
CCDC144BQ3MJ40 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
CCDC144BQ3MJ40 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC144BQ3MJ40 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC144BQ3MJ40 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
CCDC144BQ3MJ40 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC18.61■□□□□ 0.57
CCDC144BQ3MJ40 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC144BQ3MJ40 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC18.61■□□□□ 0.57
CCDC144BQ3MJ40 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC18.61■□□□□ 0.57
CCDC144BQ3MJ40 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC144BQ3MJ40 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC18.61■□□□□ 0.57
CCDC144BQ3MJ40 MEIS3P1-201ENST00000495167 958 ntBASIC18.61■□□□□ 0.57
CCDC144BQ3MJ40 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC18.61■□□□□ 0.57
CCDC144BQ3MJ40 STOM-203ENST00000538954 1257 ntTSL 5 BASIC18.61■□□□□ 0.57
CCDC144BQ3MJ40 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC18.61■□□□□ 0.57
CCDC144BQ3MJ40 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC144BQ3MJ40 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
CCDC144BQ3MJ40 BANF1P1-201ENST00000553684 263 ntBASIC18.61■□□□□ 0.57
CCDC144BQ3MJ40 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC18.61■□□□□ 0.57
CCDC144BQ3MJ40 SSH2-210ENST00000582084 560 ntTSL 3 BASIC18.61■□□□□ 0.57
CCDC144BQ3MJ40 AC013467.2-201ENST00000605472 835 ntBASIC18.61■□□□□ 0.57
CCDC144BQ3MJ40 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC144BQ3MJ40 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC18.61■□□□□ 0.57
CCDC144BQ3MJ40 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC144BQ3MJ40 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC144BQ3MJ40 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC18.61■□□□□ 0.57
CCDC144BQ3MJ40 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC144BQ3MJ40 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC18.61■□□□□ 0.57
CCDC144BQ3MJ40 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC144BQ3MJ40 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC18.61■□□□□ 0.57
CCDC144BQ3MJ40 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC144BQ3MJ40 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC144BQ3MJ40 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC18.61■□□□□ 0.57
CCDC144BQ3MJ40 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC144BQ3MJ40 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC144BQ3MJ40 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC144BQ3MJ40 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC144BQ3MJ40 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC144BQ3MJ40 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC18.6■□□□□ 0.57
CCDC144BQ3MJ40 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC18.6■□□□□ 0.57
CCDC144BQ3MJ40 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC18.6■□□□□ 0.57
CCDC144BQ3MJ40 AC073347.1-201ENST00000421633 2643 ntBASIC18.6■□□□□ 0.57
CCDC144BQ3MJ40 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC144BQ3MJ40 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
CCDC144BQ3MJ40 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC18.6■□□□□ 0.57
CCDC144BQ3MJ40 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC144BQ3MJ40 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC144BQ3MJ40 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC144BQ3MJ40 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC144BQ3MJ40 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC18.6■□□□□ 0.57
CCDC144BQ3MJ40 AC013268.4-201ENST00000637413 2228 ntBASIC18.6■□□□□ 0.57
CCDC144BQ3MJ40 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
CCDC144BQ3MJ40 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
CCDC144BQ3MJ40 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC144BQ3MJ40 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC18.6■□□□□ 0.57
CCDC144BQ3MJ40 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC144BQ3MJ40 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC144BQ3MJ40 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC18.6■□□□□ 0.57
CCDC144BQ3MJ40 RNA5SP410-201ENST00000516285 106 ntBASIC18.6■□□□□ 0.57
CCDC144BQ3MJ40 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC144BQ3MJ40 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC18.6■□□□□ 0.57
CCDC144BQ3MJ40 AC105021.1-202ENST00000570572 669 ntBASIC18.6■□□□□ 0.57
CCDC144BQ3MJ40 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC18.6■□□□□ 0.57
CCDC144BQ3MJ40 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC18.6■□□□□ 0.57
CCDC144BQ3MJ40 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC144BQ3MJ40 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC144BQ3MJ40 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms