Protein–RNA interactions for Protein: Q2NKJ3

CTC1, CST complex subunit CTC1, humanhuman

Predictions only

Length 1,217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTC1Q2NKJ3 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CTC1Q2NKJ3 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC17.11■□□□□ 0.33
CTC1Q2NKJ3 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CTC1Q2NKJ3 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
CTC1Q2NKJ3 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CTC1Q2NKJ3 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC17.11■□□□□ 0.33
CTC1Q2NKJ3 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
CTC1Q2NKJ3 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC17.11■□□□□ 0.33
CTC1Q2NKJ3 PAM16-204ENST00000571941 674 ntTSL 3 BASIC17.11■□□□□ 0.33
CTC1Q2NKJ3 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC17.11■□□□□ 0.33
CTC1Q2NKJ3 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC17.11■□□□□ 0.33
CTC1Q2NKJ3 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC17.11■□□□□ 0.33
CTC1Q2NKJ3 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CTC1Q2NKJ3 KRT8P39-201ENST00000396270 1433 ntBASIC17.11■□□□□ 0.33
CTC1Q2NKJ3 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CTC1Q2NKJ3 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
CTC1Q2NKJ3 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC17.11■□□□□ 0.33
CTC1Q2NKJ3 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CTC1Q2NKJ3 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CTC1Q2NKJ3 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CTC1Q2NKJ3 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC17.11■□□□□ 0.33
CTC1Q2NKJ3 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CTC1Q2NKJ3 PDIA3P1-201ENST00000471856 1510 ntBASIC17.11■□□□□ 0.33
CTC1Q2NKJ3 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
CTC1Q2NKJ3 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CTC1Q2NKJ3 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CTC1Q2NKJ3 SNX33P1-201ENST00000592116 1762 ntBASIC17.1■□□□□ 0.33
CTC1Q2NKJ3 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CTC1Q2NKJ3 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CTC1Q2NKJ3 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CTC1Q2NKJ3 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC17.1■□□□□ 0.33
CTC1Q2NKJ3 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC17.1■□□□□ 0.33
CTC1Q2NKJ3 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
CTC1Q2NKJ3 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CTC1Q2NKJ3 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CTC1Q2NKJ3 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CTC1Q2NKJ3 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CTC1Q2NKJ3 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CTC1Q2NKJ3 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC17.1■□□□□ 0.33
CTC1Q2NKJ3 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CTC1Q2NKJ3 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
CTC1Q2NKJ3 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC17.1■□□□□ 0.33
CTC1Q2NKJ3 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC17.1■□□□□ 0.33
CTC1Q2NKJ3 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC17.1■□□□□ 0.33
CTC1Q2NKJ3 AL355994.2-201ENST00000447882 704 ntBASIC17.1■□□□□ 0.33
CTC1Q2NKJ3 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC17.1■□□□□ 0.33
CTC1Q2NKJ3 RNA5SP412-201ENST00000516234 123 ntBASIC17.1■□□□□ 0.33
CTC1Q2NKJ3 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
CTC1Q2NKJ3 IGHV3OR16-16-201ENST00000563644 343 ntBASIC17.1■□□□□ 0.33
CTC1Q2NKJ3 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CTC1Q2NKJ3 AC074044.1-201ENST00000609673 707 ntBASIC17.1■□□□□ 0.33
CTC1Q2NKJ3 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC17.1■□□□□ 0.33
CTC1Q2NKJ3 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CTC1Q2NKJ3 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
CTC1Q2NKJ3 BANP-201ENST00000286122 2368 ntTSL 5 BASIC17.1■□□□□ 0.33
CTC1Q2NKJ3 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CTC1Q2NKJ3 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC17.1■□□□□ 0.33
CTC1Q2NKJ3 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CTC1Q2NKJ3 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CTC1Q2NKJ3 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
CTC1Q2NKJ3 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC17.1■□□□□ 0.33
CTC1Q2NKJ3 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CTC1Q2NKJ3 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CTC1Q2NKJ3 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CTC1Q2NKJ3 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC17.09■□□□□ 0.33
CTC1Q2NKJ3 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC17.09■□□□□ 0.33
CTC1Q2NKJ3 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
CTC1Q2NKJ3 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.09■□□□□ 0.33
CTC1Q2NKJ3 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC17.09■□□□□ 0.33
CTC1Q2NKJ3 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CTC1Q2NKJ3 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CTC1Q2NKJ3 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC17.09■□□□□ 0.33
CTC1Q2NKJ3 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CTC1Q2NKJ3 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CTC1Q2NKJ3 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CTC1Q2NKJ3 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
CTC1Q2NKJ3 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
CTC1Q2NKJ3 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CTC1Q2NKJ3 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CTC1Q2NKJ3 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CTC1Q2NKJ3 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CTC1Q2NKJ3 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CTC1Q2NKJ3 CTBP2P5-201ENST00000454986 1264 ntBASIC17.09■□□□□ 0.33
CTC1Q2NKJ3 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC17.09■□□□□ 0.33
CTC1Q2NKJ3 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CTC1Q2NKJ3 SLC25A47P1-201ENST00000531577 414 ntBASIC17.09■□□□□ 0.33
CTC1Q2NKJ3 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
CTC1Q2NKJ3 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC17.09■□□□□ 0.33
CTC1Q2NKJ3 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CTC1Q2NKJ3 DEK-201ENST00000244776 1441 ntTSL 2 BASIC17.09■□□□□ 0.33
CTC1Q2NKJ3 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
CTC1Q2NKJ3 CLK3P2-201ENST00000427566 1453 ntBASIC17.09■□□□□ 0.33
CTC1Q2NKJ3 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CTC1Q2NKJ3 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CTC1Q2NKJ3 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CTC1Q2NKJ3 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CTC1Q2NKJ3 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CTC1Q2NKJ3 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CTC1Q2NKJ3 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CTC1Q2NKJ3 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 63.1 ms