Protein–RNA interactions for Protein: P41273

TNFSF9, Tumor necrosis factor ligand superfamily member 9, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFSF9P41273 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
TNFSF9P41273 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC17.28■□□□□ 0.36
TNFSF9P41273 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TNFSF9P41273 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC17.28■□□□□ 0.36
TNFSF9P41273 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TNFSF9P41273 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
TNFSF9P41273 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
TNFSF9P41273 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TNFSF9P41273 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC17.28■□□□□ 0.36
TNFSF9P41273 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TNFSF9P41273 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
TNFSF9P41273 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
TNFSF9P41273 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC17.28■□□□□ 0.36
TNFSF9P41273 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TNFSF9P41273 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
TNFSF9P41273 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TNFSF9P41273 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
TNFSF9P41273 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC17.28■□□□□ 0.36
TNFSF9P41273 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
TNFSF9P41273 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC17.28■□□□□ 0.36
TNFSF9P41273 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
TNFSF9P41273 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC17.28■□□□□ 0.36
TNFSF9P41273 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC17.28■□□□□ 0.36
TNFSF9P41273 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC17.28■□□□□ 0.36
TNFSF9P41273 AC074044.1-201ENST00000609673 707 ntBASIC17.28■□□□□ 0.36
TNFSF9P41273 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC17.28■□□□□ 0.36
TNFSF9P41273 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC17.28■□□□□ 0.36
TNFSF9P41273 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
TNFSF9P41273 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TNFSF9P41273 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
TNFSF9P41273 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
TNFSF9P41273 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
TNFSF9P41273 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TNFSF9P41273 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
TNFSF9P41273 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TNFSF9P41273 ACE-203ENST00000413513 2237 ntTSL 2 BASIC17.28■□□□□ 0.36
TNFSF9P41273 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
TNFSF9P41273 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
TNFSF9P41273 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
TNFSF9P41273 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
TNFSF9P41273 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TNFSF9P41273 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TNFSF9P41273 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
TNFSF9P41273 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TNFSF9P41273 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TNFSF9P41273 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC17.27■□□□□ 0.36
TNFSF9P41273 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
TNFSF9P41273 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TNFSF9P41273 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
TNFSF9P41273 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
TNFSF9P41273 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
TNFSF9P41273 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC17.27■□□□□ 0.36
TNFSF9P41273 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
TNFSF9P41273 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TNFSF9P41273 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TNFSF9P41273 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TNFSF9P41273 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC17.27■□□□□ 0.36
TNFSF9P41273 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TNFSF9P41273 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TNFSF9P41273 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TNFSF9P41273 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC17.27■□□□□ 0.36
TNFSF9P41273 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TNFSF9P41273 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TNFSF9P41273 GOLGA6L11P-201ENST00000417252 1298 ntBASIC17.27■□□□□ 0.36
TNFSF9P41273 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC17.27■□□□□ 0.36
TNFSF9P41273 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC17.27■□□□□ 0.36
TNFSF9P41273 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC17.27■□□□□ 0.36
TNFSF9P41273 ARL16-202ENST00000570561 768 ntTSL 2 BASIC17.27■□□□□ 0.36
TNFSF9P41273 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC17.27■□□□□ 0.36
TNFSF9P41273 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC17.27■□□□□ 0.36
TNFSF9P41273 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
TNFSF9P41273 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC17.27■□□□□ 0.36
TNFSF9P41273 AC009118.2-201ENST00000613275 655 ntBASIC17.27■□□□□ 0.36
TNFSF9P41273 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC17.27■□□□□ 0.36
TNFSF9P41273 AF228730.6-201ENST00000641497 218 ntBASIC17.27■□□□□ 0.36
TNFSF9P41273 AC084121.3-201ENST00000641716 218 ntBASIC17.27■□□□□ 0.36
TNFSF9P41273 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC17.27■□□□□ 0.36
TNFSF9P41273 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
TNFSF9P41273 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC17.27■□□□□ 0.35
TNFSF9P41273 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
TNFSF9P41273 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
TNFSF9P41273 AL607033.1-201ENST00000623900 1599 ntBASIC17.27■□□□□ 0.35
TNFSF9P41273 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC17.27■□□□□ 0.35
TNFSF9P41273 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TNFSF9P41273 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TNFSF9P41273 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC17.27■□□□□ 0.35
TNFSF9P41273 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TNFSF9P41273 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
TNFSF9P41273 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TNFSF9P41273 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
TNFSF9P41273 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC17.26■□□□□ 0.35
TNFSF9P41273 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC17.26■□□□□ 0.35
TNFSF9P41273 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC17.26■□□□□ 0.35
TNFSF9P41273 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TNFSF9P41273 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TNFSF9P41273 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
TNFSF9P41273 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TNFSF9P41273 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
TNFSF9P41273 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC17.26■□□□□ 0.35
TNFSF9P41273 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms