Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SIX2Q9NPC8 AC112693.3-201ENST00000624819 1983 ntBASIC17.18■□□□□ 0.34
SIX2Q9NPC8 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
SIX2Q9NPC8 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC17.18■□□□□ 0.34
SIX2Q9NPC8 AC087481.3-201ENST00000602886 1894 ntBASIC17.18■□□□□ 0.34
SIX2Q9NPC8 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
SIX2Q9NPC8 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SIX2Q9NPC8 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
SIX2Q9NPC8 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC17.18■□□□□ 0.34
SIX2Q9NPC8 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
SIX2Q9NPC8 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
SIX2Q9NPC8 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
SIX2Q9NPC8 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SIX2Q9NPC8 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC17.17■□□□□ 0.34
SIX2Q9NPC8 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SIX2Q9NPC8 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
SIX2Q9NPC8 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SIX2Q9NPC8 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SIX2Q9NPC8 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
SIX2Q9NPC8 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC17.17■□□□□ 0.34
SIX2Q9NPC8 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SIX2Q9NPC8 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SIX2Q9NPC8 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
SIX2Q9NPC8 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC17.17■□□□□ 0.34
SIX2Q9NPC8 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC17.17■□□□□ 0.34
SIX2Q9NPC8 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC17.17■□□□□ 0.34
SIX2Q9NPC8 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC17.17■□□□□ 0.34
SIX2Q9NPC8 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC17.17■□□□□ 0.34
SIX2Q9NPC8 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SIX2Q9NPC8 AC026150.2-201ENST00000564693 1156 ntBASIC17.17■□□□□ 0.34
SIX2Q9NPC8 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SIX2Q9NPC8 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC17.17■□□□□ 0.34
SIX2Q9NPC8 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC17.17■□□□□ 0.34
SIX2Q9NPC8 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC17.17■□□□□ 0.34
SIX2Q9NPC8 AC026979.3-201ENST00000607315 403 ntBASIC17.17■□□□□ 0.34
SIX2Q9NPC8 AL133215.2-201ENST00000609242 977 ntBASIC17.17■□□□□ 0.34
SIX2Q9NPC8 AC018529.1-201ENST00000613063 361 ntBASIC17.17■□□□□ 0.34
SIX2Q9NPC8 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC17.17■□□□□ 0.34
SIX2Q9NPC8 AC009093.7-201ENST00000623853 1223 ntBASIC17.17■□□□□ 0.34
SIX2Q9NPC8 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SIX2Q9NPC8 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC17.17■□□□□ 0.34
SIX2Q9NPC8 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
SIX2Q9NPC8 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SIX2Q9NPC8 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC17.17■□□□□ 0.34
SIX2Q9NPC8 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SIX2Q9NPC8 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SIX2Q9NPC8 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
SIX2Q9NPC8 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
SIX2Q9NPC8 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
SIX2Q9NPC8 AL109954.1-202ENST00000564051 2148 ntBASIC17.17■□□□□ 0.34
SIX2Q9NPC8 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC17.17■□□□□ 0.34
SIX2Q9NPC8 AC127383.1-201ENST00000444697 1800 ntBASIC17.17■□□□□ 0.34
SIX2Q9NPC8 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SIX2Q9NPC8 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SIX2Q9NPC8 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC17.16■□□□□ 0.34
SIX2Q9NPC8 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC17.16■□□□□ 0.34
SIX2Q9NPC8 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC17.16■□□□□ 0.34
SIX2Q9NPC8 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
SIX2Q9NPC8 AC006486.2-201ENST00000624246 2199 ntBASIC17.16■□□□□ 0.34
SIX2Q9NPC8 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
SIX2Q9NPC8 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SIX2Q9NPC8 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
SIX2Q9NPC8 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
SIX2Q9NPC8 MYB-242ENST00000618728 3545 ntTSL 5 BASIC17.16■□□□□ 0.34
SIX2Q9NPC8 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SIX2Q9NPC8 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SIX2Q9NPC8 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SIX2Q9NPC8 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
SIX2Q9NPC8 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SIX2Q9NPC8 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SIX2Q9NPC8 RBM39-205ENST00000397370 612 ntTSL 2 BASIC17.16■□□□□ 0.34
SIX2Q9NPC8 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
SIX2Q9NPC8 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC17.16■□□□□ 0.34
SIX2Q9NPC8 HIST3H2BA-201ENST00000436555 524 ntBASIC17.16■□□□□ 0.34
SIX2Q9NPC8 RBPMS2P1-201ENST00000437762 623 ntBASIC17.16■□□□□ 0.34
SIX2Q9NPC8 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC17.16■□□□□ 0.34
SIX2Q9NPC8 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC17.16■□□□□ 0.34
SIX2Q9NPC8 CCND1-203ENST00000536559 553 ntTSL 3 BASIC17.16■□□□□ 0.34
SIX2Q9NPC8 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC17.16■□□□□ 0.34
SIX2Q9NPC8 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SIX2Q9NPC8 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SIX2Q9NPC8 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
SIX2Q9NPC8 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
SIX2Q9NPC8 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC17.16■□□□□ 0.34
SIX2Q9NPC8 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SIX2Q9NPC8 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SIX2Q9NPC8 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SIX2Q9NPC8 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SIX2Q9NPC8 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
SIX2Q9NPC8 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SIX2Q9NPC8 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SIX2Q9NPC8 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SIX2Q9NPC8 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
SIX2Q9NPC8 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SIX2Q9NPC8 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SIX2Q9NPC8 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SIX2Q9NPC8 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC17.15■□□□□ 0.34
SIX2Q9NPC8 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SIX2Q9NPC8 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SIX2Q9NPC8 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms