Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 HLA-V-204ENST00000476601 1289 ntBASIC15.97■□□□□ 0.15
TRIM39Q9HCM9 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
TRIM39Q9HCM9 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC15.97■□□□□ 0.15
TRIM39Q9HCM9 AL589739.1-201ENST00000607720 493 ntBASIC15.97■□□□□ 0.15
TRIM39Q9HCM9 AC073592.8-201ENST00000624126 511 ntBASIC15.97■□□□□ 0.15
TRIM39Q9HCM9 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
TRIM39Q9HCM9 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
TRIM39Q9HCM9 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TRIM39Q9HCM9 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC15.97■□□□□ 0.15
TRIM39Q9HCM9 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TRIM39Q9HCM9 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TRIM39Q9HCM9 CETN4P-206ENST00000642099 2168 ntBASIC15.97■□□□□ 0.15
TRIM39Q9HCM9 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
TRIM39Q9HCM9 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
TRIM39Q9HCM9 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC15.97■□□□□ 0.15
TRIM39Q9HCM9 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
TRIM39Q9HCM9 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TRIM39Q9HCM9 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TRIM39Q9HCM9 ABR-203ENST00000536794 2213 ntTSL 2 BASIC15.96■□□□□ 0.15
TRIM39Q9HCM9 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
TRIM39Q9HCM9 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
TRIM39Q9HCM9 MTHFR-217ENST00000641820 1569 ntBASIC15.96■□□□□ 0.15
TRIM39Q9HCM9 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TRIM39Q9HCM9 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC15.96■□□□□ 0.15
TRIM39Q9HCM9 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
TRIM39Q9HCM9 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TRIM39Q9HCM9 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
TRIM39Q9HCM9 GCK-209ENST00000616242 2260 ntTSL 5 BASIC15.96■□□□□ 0.15
TRIM39Q9HCM9 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
TRIM39Q9HCM9 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC15.96■□□□□ 0.15
TRIM39Q9HCM9 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
TRIM39Q9HCM9 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TRIM39Q9HCM9 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
TRIM39Q9HCM9 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TRIM39Q9HCM9 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
TRIM39Q9HCM9 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
TRIM39Q9HCM9 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC15.96■□□□□ 0.15
TRIM39Q9HCM9 AC027369.6-201ENST00000525520 931 ntBASIC15.96■□□□□ 0.15
TRIM39Q9HCM9 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC15.96■□□□□ 0.15
TRIM39Q9HCM9 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC15.96■□□□□ 0.15
TRIM39Q9HCM9 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC15.96■□□□□ 0.15
TRIM39Q9HCM9 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC15.96■□□□□ 0.15
TRIM39Q9HCM9 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC15.96■□□□□ 0.15
TRIM39Q9HCM9 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC15.96■□□□□ 0.15
TRIM39Q9HCM9 AC005498.2-205ENST00000593218 784 ntBASIC15.96■□□□□ 0.15
TRIM39Q9HCM9 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
TRIM39Q9HCM9 AL390955.2-201ENST00000603032 514 ntBASIC15.96■□□□□ 0.15
TRIM39Q9HCM9 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
TRIM39Q9HCM9 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TRIM39Q9HCM9 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC15.96■□□□□ 0.15
TRIM39Q9HCM9 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
TRIM39Q9HCM9 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC15.96■□□□□ 0.15
TRIM39Q9HCM9 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC15.96■□□□□ 0.15
TRIM39Q9HCM9 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
TRIM39Q9HCM9 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TRIM39Q9HCM9 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TRIM39Q9HCM9 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TRIM39Q9HCM9 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.14
TRIM39Q9HCM9 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC15.96■□□□□ 0.14
TRIM39Q9HCM9 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC15.96■□□□□ 0.14
TRIM39Q9HCM9 PGR-209ENST00000617858 2816 ntTSL 5 BASIC15.95■□□□□ 0.14
TRIM39Q9HCM9 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
TRIM39Q9HCM9 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
TRIM39Q9HCM9 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
TRIM39Q9HCM9 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC15.95■□□□□ 0.14
TRIM39Q9HCM9 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
TRIM39Q9HCM9 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC15.95■□□□□ 0.14
TRIM39Q9HCM9 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC15.95■□□□□ 0.14
TRIM39Q9HCM9 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC15.95■□□□□ 0.14
TRIM39Q9HCM9 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
TRIM39Q9HCM9 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC15.95■□□□□ 0.14
TRIM39Q9HCM9 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
TRIM39Q9HCM9 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
TRIM39Q9HCM9 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
TRIM39Q9HCM9 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC15.95■□□□□ 0.14
TRIM39Q9HCM9 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
TRIM39Q9HCM9 SYS1-203ENST00000414310 795 ntTSL 3 BASIC15.95■□□□□ 0.14
TRIM39Q9HCM9 AC092580.3-201ENST00000430932 139 ntBASIC15.95■□□□□ 0.14
TRIM39Q9HCM9 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC15.95■□□□□ 0.14
TRIM39Q9HCM9 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC15.95■□□□□ 0.14
TRIM39Q9HCM9 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
TRIM39Q9HCM9 IGHV3-42-201ENST00000520410 361 ntBASIC15.95■□□□□ 0.14
TRIM39Q9HCM9 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC15.95■□□□□ 0.14
TRIM39Q9HCM9 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC15.95■□□□□ 0.14
TRIM39Q9HCM9 AL079307.3-201ENST00000556114 283 ntBASIC15.95■□□□□ 0.14
TRIM39Q9HCM9 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC15.95■□□□□ 0.14
TRIM39Q9HCM9 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC15.95■□□□□ 0.14
TRIM39Q9HCM9 AL138828.2-201ENST00000615812 383 ntBASIC15.95■□□□□ 0.14
TRIM39Q9HCM9 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
TRIM39Q9HCM9 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TRIM39Q9HCM9 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TRIM39Q9HCM9 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TRIM39Q9HCM9 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
TRIM39Q9HCM9 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
TRIM39Q9HCM9 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
TRIM39Q9HCM9 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
TRIM39Q9HCM9 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC15.95■□□□□ 0.14
TRIM39Q9HCM9 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
TRIM39Q9HCM9 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TRIM39Q9HCM9 AC006449.5-201ENST00000610658 2098 ntBASIC15.95■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 71.4 ms