Protein–RNA interactions for Protein: Q96P16

RPRD1A, Regulation of nuclear pre-mRNA domain-containing protein 1A, humanhuman

Predicted RBP Predictions only

Length 312 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPRD1AQ96P16 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
RPRD1AQ96P16 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC16.54■□□□□ 0.24
RPRD1AQ96P16 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
RPRD1AQ96P16 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC16.54■□□□□ 0.24
RPRD1AQ96P16 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC16.54■□□□□ 0.24
RPRD1AQ96P16 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC16.54■□□□□ 0.24
RPRD1AQ96P16 ELP6-209ENST00000446787 894 ntTSL 3 BASIC16.54■□□□□ 0.24
RPRD1AQ96P16 RN7SL618P-201ENST00000477850 296 ntBASIC16.54■□□□□ 0.24
RPRD1AQ96P16 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC16.54■□□□□ 0.24
RPRD1AQ96P16 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
RPRD1AQ96P16 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC16.54■□□□□ 0.24
RPRD1AQ96P16 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC16.54■□□□□ 0.24
RPRD1AQ96P16 NAA60-208ENST00000570819 833 ntTSL 2 BASIC16.54■□□□□ 0.24
RPRD1AQ96P16 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC16.54■□□□□ 0.24
RPRD1AQ96P16 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
RPRD1AQ96P16 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
RPRD1AQ96P16 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
RPRD1AQ96P16 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
RPRD1AQ96P16 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC16.54■□□□□ 0.24
RPRD1AQ96P16 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
RPRD1AQ96P16 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
RPRD1AQ96P16 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC16.54■□□□□ 0.24
RPRD1AQ96P16 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
RPRD1AQ96P16 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
RPRD1AQ96P16 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
RPRD1AQ96P16 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC16.53■□□□□ 0.24
RPRD1AQ96P16 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
RPRD1AQ96P16 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
RPRD1AQ96P16 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC16.53■□□□□ 0.24
RPRD1AQ96P16 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
RPRD1AQ96P16 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
RPRD1AQ96P16 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
RPRD1AQ96P16 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
RPRD1AQ96P16 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
RPRD1AQ96P16 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC16.53■□□□□ 0.24
RPRD1AQ96P16 AC087499.5-201ENST00000452760 1342 ntBASIC16.53■□□□□ 0.24
RPRD1AQ96P16 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
RPRD1AQ96P16 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
RPRD1AQ96P16 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC16.53■□□□□ 0.24
RPRD1AQ96P16 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
RPRD1AQ96P16 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
RPRD1AQ96P16 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
RPRD1AQ96P16 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
RPRD1AQ96P16 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC16.53■□□□□ 0.24
RPRD1AQ96P16 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
RPRD1AQ96P16 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC16.53■□□□□ 0.24
RPRD1AQ96P16 TSSK5P-201ENST00000423978 907 ntBASIC16.53■□□□□ 0.24
RPRD1AQ96P16 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC16.53■□□□□ 0.24
RPRD1AQ96P16 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC16.53■□□□□ 0.24
RPRD1AQ96P16 BCRP1-201ENST00000444246 691 ntBASIC16.53■□□□□ 0.24
RPRD1AQ96P16 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC16.53■□□□□ 0.24
RPRD1AQ96P16 FXR1-221ENST00000491674 365 ntTSL 2 BASIC16.53■□□□□ 0.24
RPRD1AQ96P16 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC16.53■□□□□ 0.24
RPRD1AQ96P16 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC16.53■□□□□ 0.24
RPRD1AQ96P16 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC16.53■□□□□ 0.24
RPRD1AQ96P16 AL096865.1-201ENST00000606796 927 ntBASIC16.53■□□□□ 0.24
RPRD1AQ96P16 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
RPRD1AQ96P16 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
RPRD1AQ96P16 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
RPRD1AQ96P16 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
RPRD1AQ96P16 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC16.53■□□□□ 0.24
RPRD1AQ96P16 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC16.53■□□□□ 0.24
RPRD1AQ96P16 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC16.53■□□□□ 0.24
RPRD1AQ96P16 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
RPRD1AQ96P16 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
RPRD1AQ96P16 KRT8P37-201ENST00000451609 1420 ntBASIC16.53■□□□□ 0.24
RPRD1AQ96P16 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
RPRD1AQ96P16 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
RPRD1AQ96P16 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC16.52■□□□□ 0.24
RPRD1AQ96P16 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC16.52■□□□□ 0.24
RPRD1AQ96P16 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
RPRD1AQ96P16 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC16.52■□□□□ 0.24
RPRD1AQ96P16 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
RPRD1AQ96P16 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC16.52■□□□□ 0.24
RPRD1AQ96P16 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
RPRD1AQ96P16 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
RPRD1AQ96P16 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
RPRD1AQ96P16 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC16.52■□□□□ 0.24
RPRD1AQ96P16 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
RPRD1AQ96P16 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC16.52■□□□□ 0.24
RPRD1AQ96P16 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
RPRD1AQ96P16 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
RPRD1AQ96P16 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
RPRD1AQ96P16 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC16.52■□□□□ 0.24
RPRD1AQ96P16 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
RPRD1AQ96P16 AC004890.2-204ENST00000481968 304 ntBASIC16.52■□□□□ 0.24
RPRD1AQ96P16 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
RPRD1AQ96P16 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC16.52■□□□□ 0.24
RPRD1AQ96P16 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
RPRD1AQ96P16 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC16.52■□□□□ 0.24
RPRD1AQ96P16 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC16.52■□□□□ 0.24
RPRD1AQ96P16 MIR6069-201ENST00000620069 79 ntBASIC16.52■□□□□ 0.24
RPRD1AQ96P16 AL033527.5-202ENST00000641632 1098 ntBASIC16.52■□□□□ 0.24
RPRD1AQ96P16 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
RPRD1AQ96P16 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
RPRD1AQ96P16 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
RPRD1AQ96P16 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
RPRD1AQ96P16 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
RPRD1AQ96P16 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
RPRD1AQ96P16 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms