Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC14.09□□□□□ -0.15
TFF3Q07654 GALT-202ENST00000450095 1280 ntTSL 2 BASIC14.09□□□□□ -0.15
TFF3Q07654 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
TFF3Q07654 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC14.09□□□□□ -0.15
TFF3Q07654 TIMM17BP1-201ENST00000545713 516 ntBASIC14.09□□□□□ -0.15
TFF3Q07654 AC092552.1-201ENST00000547243 906 ntBASIC14.09□□□□□ -0.15
TFF3Q07654 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC14.09□□□□□ -0.15
TFF3Q07654 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC14.09□□□□□ -0.15
TFF3Q07654 AC133552.6-201ENST00000613406 534 ntBASIC14.09□□□□□ -0.15
TFF3Q07654 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC14.09□□□□□ -0.15
TFF3Q07654 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
TFF3Q07654 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
TFF3Q07654 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
TFF3Q07654 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
TFF3Q07654 AL136982.4-201ENST00000437689 1740 ntBASIC14.09□□□□□ -0.15
TFF3Q07654 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC14.09□□□□□ -0.15
TFF3Q07654 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
TFF3Q07654 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
TFF3Q07654 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
TFF3Q07654 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
TFF3Q07654 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
TFF3Q07654 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC14.09□□□□□ -0.15
TFF3Q07654 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC14.09□□□□□ -0.15
TFF3Q07654 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC14.09□□□□□ -0.15
TFF3Q07654 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
TFF3Q07654 CYP4F24P-201ENST00000586049 1580 ntBASIC14.09□□□□□ -0.15
TFF3Q07654 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
TFF3Q07654 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
TFF3Q07654 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
TFF3Q07654 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.15
TFF3Q07654 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.15
TFF3Q07654 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC14.08□□□□□ -0.15
TFF3Q07654 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC14.08□□□□□ -0.15
TFF3Q07654 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.15
TFF3Q07654 DEK-201ENST00000244776 1441 ntTSL 2 BASIC14.08□□□□□ -0.15
TFF3Q07654 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
TFF3Q07654 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC14.08□□□□□ -0.16
TFF3Q07654 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
TFF3Q07654 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC14.08□□□□□ -0.16
TFF3Q07654 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
TFF3Q07654 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC14.08□□□□□ -0.16
TFF3Q07654 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC14.08□□□□□ -0.16
TFF3Q07654 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
TFF3Q07654 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
TFF3Q07654 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
TFF3Q07654 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
TFF3Q07654 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC14.08□□□□□ -0.16
TFF3Q07654 BOLA2P3-201ENST00000404566 256 ntBASIC14.08□□□□□ -0.16
TFF3Q07654 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC14.08□□□□□ -0.16
TFF3Q07654 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC14.08□□□□□ -0.16
TFF3Q07654 CROCCP4-201ENST00000457096 498 ntBASIC14.08□□□□□ -0.16
TFF3Q07654 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC14.08□□□□□ -0.16
TFF3Q07654 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC14.08□□□□□ -0.16
TFF3Q07654 USP32P1-208ENST00000506594 1164 ntBASIC14.08□□□□□ -0.16
TFF3Q07654 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC14.08□□□□□ -0.16
TFF3Q07654 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC14.08□□□□□ -0.16
TFF3Q07654 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC14.08□□□□□ -0.16
TFF3Q07654 PAM16-215ENST00000577031 548 ntTSL 4 BASIC14.08□□□□□ -0.16
TFF3Q07654 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC14.08□□□□□ -0.16
TFF3Q07654 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC14.08□□□□□ -0.16
TFF3Q07654 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC14.08□□□□□ -0.16
TFF3Q07654 AL391069.4-201ENST00000609583 481 ntBASIC14.08□□□□□ -0.16
TFF3Q07654 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
TFF3Q07654 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
TFF3Q07654 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
TFF3Q07654 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC14.08□□□□□ -0.16
TFF3Q07654 FLJ38576-201ENST00000623820 2459 ntBASIC14.08□□□□□ -0.16
TFF3Q07654 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
TFF3Q07654 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
TFF3Q07654 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC14.08□□□□□ -0.16
TFF3Q07654 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC14.08□□□□□ -0.16
TFF3Q07654 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
TFF3Q07654 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
TFF3Q07654 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
TFF3Q07654 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
TFF3Q07654 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
TFF3Q07654 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
TFF3Q07654 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
TFF3Q07654 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
TFF3Q07654 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
TFF3Q07654 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
TFF3Q07654 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
TFF3Q07654 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC14.07□□□□□ -0.16
TFF3Q07654 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
TFF3Q07654 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
TFF3Q07654 DOC2GP-204ENST00000639052 2548 ntBASIC14.07□□□□□ -0.16
TFF3Q07654 CLK3P2-201ENST00000427566 1453 ntBASIC14.07□□□□□ -0.16
TFF3Q07654 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC14.07□□□□□ -0.16
TFF3Q07654 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
TFF3Q07654 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
TFF3Q07654 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
TFF3Q07654 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
TFF3Q07654 REXO1L6P-201ENST00000603433 1515 ntBASIC14.07□□□□□ -0.16
TFF3Q07654 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
TFF3Q07654 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
TFF3Q07654 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
TFF3Q07654 MPV17-208ENST00000405076 603 ntTSL 5 BASIC14.07□□□□□ -0.16
TFF3Q07654 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
TFF3Q07654 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC14.07□□□□□ -0.16
TFF3Q07654 NOP2-211ENST00000540228 668 ntTSL 2 BASIC14.07□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 64.5 ms