Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC14.37□□□□□ -0.11
H3F3AP84243 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
H3F3AP84243 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC14.37□□□□□ -0.11
H3F3AP84243 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
H3F3AP84243 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC14.37□□□□□ -0.11
H3F3AP84243 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC14.37□□□□□ -0.11
H3F3AP84243 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC14.37□□□□□ -0.11
H3F3AP84243 GPER1-207ENST00000619052 571 ntTSL 2 BASIC14.37□□□□□ -0.11
H3F3AP84243 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
H3F3AP84243 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
H3F3AP84243 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
H3F3AP84243 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
H3F3AP84243 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
H3F3AP84243 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
H3F3AP84243 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
H3F3AP84243 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC14.37□□□□□ -0.11
H3F3AP84243 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
H3F3AP84243 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
H3F3AP84243 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
H3F3AP84243 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
H3F3AP84243 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
H3F3AP84243 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC14.36□□□□□ -0.11
H3F3AP84243 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
H3F3AP84243 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
H3F3AP84243 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
H3F3AP84243 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
H3F3AP84243 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
H3F3AP84243 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
H3F3AP84243 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
H3F3AP84243 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
H3F3AP84243 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
H3F3AP84243 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
H3F3AP84243 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
H3F3AP84243 ACE-203ENST00000413513 2237 ntTSL 2 BASIC14.36□□□□□ -0.11
H3F3AP84243 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC14.36□□□□□ -0.11
H3F3AP84243 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC14.36□□□□□ -0.11
H3F3AP84243 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
H3F3AP84243 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
H3F3AP84243 WRB-204ENST00000398753 699 ntTSL 3 BASIC14.36□□□□□ -0.11
H3F3AP84243 GGCT-205ENST00000409436 954 ntTSL 3 BASIC14.36□□□□□ -0.11
H3F3AP84243 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC14.36□□□□□ -0.11
H3F3AP84243 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC14.36□□□□□ -0.11
H3F3AP84243 AC067863.1-201ENST00000494933 530 ntBASIC14.36□□□□□ -0.11
H3F3AP84243 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
H3F3AP84243 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC14.36□□□□□ -0.11
H3F3AP84243 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC14.36□□□□□ -0.11
H3F3AP84243 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC14.36□□□□□ -0.11
H3F3AP84243 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC14.36□□□□□ -0.11
H3F3AP84243 FLJ16779-201ENST00000612722 7638 ntBASIC14.36□□□□□ -0.11
H3F3AP84243 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
H3F3AP84243 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
H3F3AP84243 AC103702.1-201ENST00000548801 2630 ntBASIC14.36□□□□□ -0.11
H3F3AP84243 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC14.36□□□□□ -0.11
H3F3AP84243 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
H3F3AP84243 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
H3F3AP84243 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC14.36□□□□□ -0.11
H3F3AP84243 GRAMD4P3-201ENST00000621665 1669 ntBASIC14.36□□□□□ -0.11
H3F3AP84243 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
H3F3AP84243 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
H3F3AP84243 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
H3F3AP84243 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC14.35□□□□□ -0.11
H3F3AP84243 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
H3F3AP84243 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
H3F3AP84243 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC14.35□□□□□ -0.11
H3F3AP84243 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
H3F3AP84243 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
H3F3AP84243 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
H3F3AP84243 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
H3F3AP84243 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC14.35□□□□□ -0.11
H3F3AP84243 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
H3F3AP84243 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
H3F3AP84243 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
H3F3AP84243 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
H3F3AP84243 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
H3F3AP84243 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
H3F3AP84243 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
H3F3AP84243 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
H3F3AP84243 RPS19-201ENST00000221975 500 ntTSL 3 BASIC14.35□□□□□ -0.11
H3F3AP84243 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
H3F3AP84243 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
H3F3AP84243 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
H3F3AP84243 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
H3F3AP84243 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
H3F3AP84243 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
H3F3AP84243 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
H3F3AP84243 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
H3F3AP84243 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
H3F3AP84243 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC14.35□□□□□ -0.11
H3F3AP84243 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
H3F3AP84243 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC14.35□□□□□ -0.11
H3F3AP84243 AL645939.2-201ENST00000427340 991 ntBASIC14.35□□□□□ -0.11
H3F3AP84243 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC14.35□□□□□ -0.11
H3F3AP84243 KLF2P3-201ENST00000451977 1087 ntBASIC14.35□□□□□ -0.11
H3F3AP84243 SATB1-217ENST00000493952 626 ntTSL 3 BASIC14.35□□□□□ -0.11
H3F3AP84243 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC14.35□□□□□ -0.11
H3F3AP84243 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC14.35□□□□□ -0.11
H3F3AP84243 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
H3F3AP84243 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC14.35□□□□□ -0.11
H3F3AP84243 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
H3F3AP84243 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms