Protein–RNA interactions for Protein: P58304

VSX2, Visual system homeobox 2, humanhuman

Predicted RBP Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX2P58304 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
VSX2P58304 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
VSX2P58304 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VSX2P58304 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VSX2P58304 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
VSX2P58304 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
VSX2P58304 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC15.4■□□□□ 0.06
VSX2P58304 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
VSX2P58304 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
VSX2P58304 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VSX2P58304 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
VSX2P58304 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VSX2P58304 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
VSX2P58304 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC15.4■□□□□ 0.06
VSX2P58304 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC15.4■□□□□ 0.06
VSX2P58304 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
VSX2P58304 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
VSX2P58304 HNRNPA3P1-201ENST00000401429 1139 ntBASIC15.4■□□□□ 0.06
VSX2P58304 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
VSX2P58304 RPL37AP1-201ENST00000412502 279 ntBASIC15.4■□□□□ 0.06
VSX2P58304 AC241585.1-201ENST00000433527 519 ntBASIC15.4■□□□□ 0.06
VSX2P58304 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC15.4■□□□□ 0.06
VSX2P58304 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
VSX2P58304 AC245100.5-201ENST00000452108 331 ntBASIC15.4■□□□□ 0.06
VSX2P58304 HNRNPA3P5-201ENST00000455201 833 ntBASIC15.4■□□□□ 0.06
VSX2P58304 RNA5SP421-201ENST00000516864 134 ntBASIC15.4■□□□□ 0.06
VSX2P58304 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
VSX2P58304 AQP6-203ENST00000551733 849 ntTSL 3 BASIC15.4■□□□□ 0.06
VSX2P58304 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC15.4■□□□□ 0.06
VSX2P58304 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VSX2P58304 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC15.4■□□□□ 0.06
VSX2P58304 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC15.4■□□□□ 0.06
VSX2P58304 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
VSX2P58304 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
VSX2P58304 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VSX2P58304 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
VSX2P58304 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
VSX2P58304 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC15.4■□□□□ 0.06
VSX2P58304 AC100757.3-201ENST00000622361 1406 ntBASIC15.4■□□□□ 0.06
VSX2P58304 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
VSX2P58304 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC15.4■□□□□ 0.06
VSX2P58304 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC15.4■□□□□ 0.06
VSX2P58304 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC15.4■□□□□ 0.06
VSX2P58304 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
VSX2P58304 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VSX2P58304 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC15.4■□□□□ 0.06
VSX2P58304 AL136982.4-201ENST00000437689 1740 ntBASIC15.4■□□□□ 0.06
VSX2P58304 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC15.4■□□□□ 0.06
VSX2P58304 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC15.4■□□□□ 0.06
VSX2P58304 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC15.4■□□□□ 0.06
VSX2P58304 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VSX2P58304 GCK-209ENST00000616242 2260 ntTSL 5 BASIC15.4■□□□□ 0.06
VSX2P58304 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
VSX2P58304 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC15.39■□□□□ 0.05
VSX2P58304 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VSX2P58304 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
VSX2P58304 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC15.39■□□□□ 0.05
VSX2P58304 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC15.39■□□□□ 0.05
VSX2P58304 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
VSX2P58304 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
VSX2P58304 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
VSX2P58304 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
VSX2P58304 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC15.39■□□□□ 0.05
VSX2P58304 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
VSX2P58304 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VSX2P58304 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC15.39■□□□□ 0.05
VSX2P58304 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC15.39■□□□□ 0.05
VSX2P58304 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VSX2P58304 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VSX2P58304 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
VSX2P58304 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
VSX2P58304 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VSX2P58304 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
VSX2P58304 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VSX2P58304 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC15.39■□□□□ 0.05
VSX2P58304 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC15.39■□□□□ 0.05
VSX2P58304 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC15.39■□□□□ 0.05
VSX2P58304 INGX-202ENST00000489074 768 ntBASIC15.39■□□□□ 0.05
VSX2P58304 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC15.39■□□□□ 0.05
VSX2P58304 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC15.39■□□□□ 0.05
VSX2P58304 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VSX2P58304 SPCS2P1-201ENST00000561636 679 ntBASIC15.39■□□□□ 0.05
VSX2P58304 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC15.39■□□□□ 0.05
VSX2P58304 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC15.39■□□□□ 0.05
VSX2P58304 INO80C-206ENST00000586489 594 ntTSL 3 BASIC15.39■□□□□ 0.05
VSX2P58304 AL590560.3-201ENST00000623350 461 ntBASIC15.39■□□□□ 0.05
VSX2P58304 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VSX2P58304 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
VSX2P58304 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC15.39■□□□□ 0.05
VSX2P58304 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
VSX2P58304 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC15.39■□□□□ 0.05
VSX2P58304 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VSX2P58304 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC15.39■□□□□ 0.05
VSX2P58304 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VSX2P58304 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
VSX2P58304 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
VSX2P58304 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC15.39■□□□□ 0.05
VSX2P58304 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VSX2P58304 AC006449.5-201ENST00000610658 2098 ntBASIC15.39■□□□□ 0.05
VSX2P58304 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms