Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
NEK3P51956 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
NEK3P51956 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC16.61■□□□□ 0.25
NEK3P51956 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
NEK3P51956 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
NEK3P51956 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
NEK3P51956 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
NEK3P51956 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
NEK3P51956 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
NEK3P51956 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
NEK3P51956 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
NEK3P51956 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
NEK3P51956 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
NEK3P51956 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC16.6■□□□□ 0.25
NEK3P51956 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
NEK3P51956 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
NEK3P51956 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
NEK3P51956 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
NEK3P51956 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
NEK3P51956 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC16.6■□□□□ 0.25
NEK3P51956 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC16.6■□□□□ 0.25
NEK3P51956 CDC14C-201ENST00000428251 1719 ntBASIC16.6■□□□□ 0.25
NEK3P51956 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC16.6■□□□□ 0.25
NEK3P51956 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
NEK3P51956 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
NEK3P51956 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC16.6■□□□□ 0.25
NEK3P51956 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
NEK3P51956 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
NEK3P51956 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
NEK3P51956 AC142381.1-201ENST00000426099 345 ntBASIC16.6■□□□□ 0.25
NEK3P51956 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC16.6■□□□□ 0.25
NEK3P51956 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC16.6■□□□□ 0.25
NEK3P51956 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
NEK3P51956 GATD1-206ENST00000526325 756 ntTSL 5 BASIC16.6■□□□□ 0.25
NEK3P51956 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC16.6■□□□□ 0.25
NEK3P51956 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC16.6■□□□□ 0.25
NEK3P51956 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC16.6■□□□□ 0.25
NEK3P51956 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC16.6■□□□□ 0.25
NEK3P51956 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC16.6■□□□□ 0.25
NEK3P51956 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC16.6■□□□□ 0.25
NEK3P51956 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC16.6■□□□□ 0.25
NEK3P51956 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
NEK3P51956 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
NEK3P51956 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC16.6■□□□□ 0.25
NEK3P51956 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC16.6■□□□□ 0.25
NEK3P51956 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
NEK3P51956 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC16.6■□□□□ 0.25
NEK3P51956 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC16.6■□□□□ 0.25
NEK3P51956 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC16.6■□□□□ 0.25
NEK3P51956 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC16.6■□□□□ 0.25
NEK3P51956 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
NEK3P51956 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC16.6■□□□□ 0.25
NEK3P51956 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
NEK3P51956 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
NEK3P51956 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
NEK3P51956 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC16.6■□□□□ 0.25
NEK3P51956 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
NEK3P51956 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC16.59■□□□□ 0.25
NEK3P51956 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
NEK3P51956 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
NEK3P51956 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
NEK3P51956 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
NEK3P51956 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
NEK3P51956 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC16.59■□□□□ 0.25
NEK3P51956 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
NEK3P51956 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC16.59■□□□□ 0.25
NEK3P51956 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC16.59■□□□□ 0.25
NEK3P51956 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
NEK3P51956 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC16.59■□□□□ 0.25
NEK3P51956 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
NEK3P51956 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC16.59■□□□□ 0.25
NEK3P51956 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
NEK3P51956 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC16.59■□□□□ 0.25
NEK3P51956 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
NEK3P51956 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
NEK3P51956 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
NEK3P51956 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC16.59■□□□□ 0.25
NEK3P51956 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
NEK3P51956 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC16.59■□□□□ 0.25
NEK3P51956 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
NEK3P51956 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
NEK3P51956 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
NEK3P51956 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC16.59■□□□□ 0.25
NEK3P51956 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC16.59■□□□□ 0.25
NEK3P51956 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
NEK3P51956 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
NEK3P51956 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
NEK3P51956 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC16.59■□□□□ 0.25
NEK3P51956 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
NEK3P51956 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
NEK3P51956 AC022532.1-201ENST00000624563 1728 ntBASIC16.59■□□□□ 0.25
NEK3P51956 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
NEK3P51956 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC16.59■□□□□ 0.25
NEK3P51956 LINC02447-202ENST00000501888 2146 ntBASIC16.58■□□□□ 0.25
NEK3P51956 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC16.58■□□□□ 0.25
NEK3P51956 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.25
NEK3P51956 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.25
NEK3P51956 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
NEK3P51956 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
NEK3P51956 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms