Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC18.82■□□□□ 0.6
HLA-DOAP06340 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
HLA-DOAP06340 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HLA-DOAP06340 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC18.82■□□□□ 0.6
HLA-DOAP06340 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
HLA-DOAP06340 MIR648-201ENST00000385046 94 ntBASIC18.82■□□□□ 0.6
HLA-DOAP06340 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HLA-DOAP06340 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
HLA-DOAP06340 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC18.82■□□□□ 0.6
HLA-DOAP06340 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC18.82■□□□□ 0.6
HLA-DOAP06340 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC18.82■□□□□ 0.6
HLA-DOAP06340 ATP5G2P4-201ENST00000442175 420 ntBASIC18.82■□□□□ 0.6
HLA-DOAP06340 TTTY23B-201ENST00000442790 549 ntBASIC18.82■□□□□ 0.6
HLA-DOAP06340 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC18.82■□□□□ 0.6
HLA-DOAP06340 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC18.82■□□□□ 0.6
HLA-DOAP06340 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC18.82■□□□□ 0.6
HLA-DOAP06340 AC092552.1-201ENST00000547243 906 ntBASIC18.82■□□□□ 0.6
HLA-DOAP06340 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC18.82■□□□□ 0.6
HLA-DOAP06340 AL391069.4-201ENST00000609583 481 ntBASIC18.82■□□□□ 0.6
HLA-DOAP06340 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HLA-DOAP06340 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC18.82■□□□□ 0.6
HLA-DOAP06340 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC18.82■□□□□ 0.6
HLA-DOAP06340 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC18.82■□□□□ 0.6
HLA-DOAP06340 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC18.82■□□□□ 0.6
HLA-DOAP06340 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
HLA-DOAP06340 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HLA-DOAP06340 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
HLA-DOAP06340 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC18.82■□□□□ 0.6
HLA-DOAP06340 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HLA-DOAP06340 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC18.82■□□□□ 0.6
HLA-DOAP06340 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HLA-DOAP06340 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
HLA-DOAP06340 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC18.81■□□□□ 0.6
HLA-DOAP06340 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HLA-DOAP06340 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
HLA-DOAP06340 AC026471.1-201ENST00000564629 3026 ntBASIC18.81■□□□□ 0.6
HLA-DOAP06340 CDC14C-201ENST00000428251 1719 ntBASIC18.81■□□□□ 0.6
HLA-DOAP06340 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HLA-DOAP06340 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC18.81■□□□□ 0.6
HLA-DOAP06340 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
HLA-DOAP06340 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC18.81■□□□□ 0.6
HLA-DOAP06340 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
HLA-DOAP06340 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC18.81■□□□□ 0.6
HLA-DOAP06340 USP40-206ENST00000443711 628 ntTSL 2 BASIC18.81■□□□□ 0.6
HLA-DOAP06340 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
HLA-DOAP06340 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
HLA-DOAP06340 SLED1-202ENST00000512051 380 ntBASIC18.81■□□□□ 0.6
HLA-DOAP06340 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HLA-DOAP06340 GLI4-203ENST00000517468 963 ntTSL 5 BASIC18.81■□□□□ 0.6
HLA-DOAP06340 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC18.81■□□□□ 0.6
HLA-DOAP06340 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HLA-DOAP06340 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC18.81■□□□□ 0.6
HLA-DOAP06340 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC18.81■□□□□ 0.6
HLA-DOAP06340 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
HLA-DOAP06340 AL033527.5-201ENST00000641382 801 ntBASIC18.81■□□□□ 0.6
HLA-DOAP06340 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HLA-DOAP06340 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
HLA-DOAP06340 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
HLA-DOAP06340 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HLA-DOAP06340 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HLA-DOAP06340 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
HLA-DOAP06340 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC18.81■□□□□ 0.6
HLA-DOAP06340 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HLA-DOAP06340 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HLA-DOAP06340 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HLA-DOAP06340 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
HLA-DOAP06340 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HLA-DOAP06340 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HLA-DOAP06340 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
HLA-DOAP06340 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
HLA-DOAP06340 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
HLA-DOAP06340 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC18.8■□□□□ 0.6
HLA-DOAP06340 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HLA-DOAP06340 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HLA-DOAP06340 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
HLA-DOAP06340 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HLA-DOAP06340 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
HLA-DOAP06340 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC18.8■□□□□ 0.6
HLA-DOAP06340 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
HLA-DOAP06340 AC136604.1-201ENST00000418535 575 ntBASIC18.8■□□□□ 0.6
HLA-DOAP06340 ARSEP1-201ENST00000420443 635 ntBASIC18.8■□□□□ 0.6
HLA-DOAP06340 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC18.8■□□□□ 0.6
HLA-DOAP06340 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HLA-DOAP06340 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC18.8■□□□□ 0.6
HLA-DOAP06340 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
HLA-DOAP06340 HNRNPUP1-201ENST00000554987 333 ntBASIC18.8■□□□□ 0.6
HLA-DOAP06340 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
HLA-DOAP06340 AL162274.1-201ENST00000617191 1098 ntBASIC18.8■□□□□ 0.6
HLA-DOAP06340 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HLA-DOAP06340 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC18.8■□□□□ 0.6
HLA-DOAP06340 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC18.8■□□□□ 0.6
HLA-DOAP06340 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC18.8■□□□□ 0.6
HLA-DOAP06340 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
HLA-DOAP06340 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HLA-DOAP06340 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HLA-DOAP06340 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
HLA-DOAP06340 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
HLA-DOAP06340 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HLA-DOAP06340 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
HLA-DOAP06340 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms