Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
COL2A1P02458 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL2A1P02458 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL2A1P02458 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL2A1P02458 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL2A1P02458 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL2A1P02458 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL2A1P02458 AC106820.2-201ENST00000563775 3264 ntBASIC18.44■□□□□ 0.54
COL2A1P02458 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL2A1P02458 ZBTB12BP-201ENST00000314232 1122 ntBASIC18.44■□□□□ 0.54
COL2A1P02458 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL2A1P02458 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC18.44■□□□□ 0.54
COL2A1P02458 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC18.44■□□□□ 0.54
COL2A1P02458 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC18.44■□□□□ 0.54
COL2A1P02458 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC18.44■□□□□ 0.54
COL2A1P02458 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL2A1P02458 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC18.44■□□□□ 0.54
COL2A1P02458 KSR1-207ENST00000578981 748 ntTSL 4 BASIC18.44■□□□□ 0.54
COL2A1P02458 LARP4-220ENST00000615080 856 ntTSL 5 BASIC18.44■□□□□ 0.54
COL2A1P02458 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC18.44■□□□□ 0.54
COL2A1P02458 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL2A1P02458 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
COL2A1P02458 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
COL2A1P02458 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC18.43■□□□□ 0.54
COL2A1P02458 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL2A1P02458 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC18.43■□□□□ 0.54
COL2A1P02458 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
COL2A1P02458 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC18.43■□□□□ 0.54
COL2A1P02458 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC18.43■□□□□ 0.54
COL2A1P02458 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL2A1P02458 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL2A1P02458 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
COL2A1P02458 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL2A1P02458 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL2A1P02458 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
COL2A1P02458 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL2A1P02458 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL2A1P02458 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
COL2A1P02458 ACTBP8-201ENST00000403258 1108 ntBASIC18.43■□□□□ 0.54
COL2A1P02458 MIR1908-201ENST00000410394 80 ntBASIC18.43■□□□□ 0.54
COL2A1P02458 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC18.43■□□□□ 0.54
COL2A1P02458 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC18.43■□□□□ 0.54
COL2A1P02458 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL2A1P02458 PACS1-203ENST00000524815 628 ntTSL 4 BASIC18.43■□□□□ 0.54
COL2A1P02458 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC18.43■□□□□ 0.54
COL2A1P02458 AP005019.2-201ENST00000615104 511 ntBASIC18.43■□□□□ 0.54
COL2A1P02458 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL2A1P02458 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL2A1P02458 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL2A1P02458 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC18.43■□□□□ 0.54
COL2A1P02458 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC18.43■□□□□ 0.54
COL2A1P02458 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
COL2A1P02458 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC18.42■□□□□ 0.54
COL2A1P02458 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL2A1P02458 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC18.42■□□□□ 0.54
COL2A1P02458 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC18.42■□□□□ 0.54
COL2A1P02458 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
COL2A1P02458 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL2A1P02458 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC18.42■□□□□ 0.54
COL2A1P02458 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC18.42■□□□□ 0.54
COL2A1P02458 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC18.42■□□□□ 0.54
COL2A1P02458 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC18.42■□□□□ 0.54
COL2A1P02458 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL2A1P02458 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC18.42■□□□□ 0.54
COL2A1P02458 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL2A1P02458 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL2A1P02458 TPO-206ENST00000382269 1155 ntTSL 5 BASIC18.42■□□□□ 0.54
COL2A1P02458 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC18.42■□□□□ 0.54
COL2A1P02458 ACTBP11-201ENST00000436287 1126 ntBASIC18.42■□□□□ 0.54
COL2A1P02458 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL2A1P02458 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC18.42■□□□□ 0.54
COL2A1P02458 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
COL2A1P02458 AP001582.1-201ENST00000525856 295 ntBASIC18.42■□□□□ 0.54
COL2A1P02458 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
COL2A1P02458 AC008687.7-202ENST00000637404 953 ntBASIC18.42■□□□□ 0.54
COL2A1P02458 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC18.42■□□□□ 0.54
COL2A1P02458 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC18.42■□□□□ 0.54
COL2A1P02458 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC18.42■□□□□ 0.54
COL2A1P02458 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL2A1P02458 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL2A1P02458 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC18.42■□□□□ 0.54
COL2A1P02458 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC18.42■□□□□ 0.54
COL2A1P02458 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL2A1P02458 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL2A1P02458 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL2A1P02458 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC18.41■□□□□ 0.54
COL2A1P02458 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL2A1P02458 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL2A1P02458 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
COL2A1P02458 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC18.41■□□□□ 0.54
COL2A1P02458 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC18.41■□□□□ 0.54
COL2A1P02458 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC18.41■□□□□ 0.54
COL2A1P02458 TBCB-211ENST00000589996 724 ntTSL 3 BASIC18.41■□□□□ 0.54
COL2A1P02458 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC18.41■□□□□ 0.54
COL2A1P02458 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL2A1P02458 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC18.41■□□□□ 0.54
COL2A1P02458 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL2A1P02458 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC18.41■□□□□ 0.54
COL2A1P02458 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL2A1P02458 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms