Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SOX3P41225 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SOX3P41225 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC15.2■□□□□ 0.02
SOX3P41225 HNRNPFP1-201ENST00000391730 1133 ntBASIC15.2■□□□□ 0.02
SOX3P41225 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC15.2■□□□□ 0.02
SOX3P41225 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC15.2■□□□□ 0.02
SOX3P41225 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC15.2■□□□□ 0.02
SOX3P41225 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC15.2■□□□□ 0.02
SOX3P41225 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SOX3P41225 AC105233.2-201ENST00000523697 349 ntBASIC15.2■□□□□ 0.02
SOX3P41225 AF228730.5-201ENST00000530288 346 ntBASIC15.2■□□□□ 0.02
SOX3P41225 RFPL4AP1-201ENST00000530883 850 ntBASIC15.2■□□□□ 0.02
SOX3P41225 AC025678.2-201ENST00000562061 970 ntBASIC15.2■□□□□ 0.02
SOX3P41225 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC15.2■□□□□ 0.02
SOX3P41225 LSM12-202ENST00000585388 942 ntTSL 3 BASIC15.2■□□□□ 0.02
SOX3P41225 SSH2-211ENST00000590153 570 ntTSL 4 BASIC15.2■□□□□ 0.02
SOX3P41225 AC106028.4-201ENST00000614509 607 ntBASIC15.2■□□□□ 0.02
SOX3P41225 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC15.2■□□□□ 0.02
SOX3P41225 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC15.2■□□□□ 0.02
SOX3P41225 AC084121.4-201ENST00000641598 221 ntBASIC15.2■□□□□ 0.02
SOX3P41225 AF228730.8-201ENST00000642140 221 ntBASIC15.2■□□□□ 0.02
SOX3P41225 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SOX3P41225 GPAA1P2-202ENST00000606848 1787 ntBASIC15.2■□□□□ 0.02
SOX3P41225 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SOX3P41225 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SOX3P41225 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC15.2■□□□□ 0.02
SOX3P41225 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
SOX3P41225 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SOX3P41225 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC15.2■□□□□ 0.02
SOX3P41225 NID2-208ENST00000617139 3827 ntTSL 5 BASIC15.2■□□□□ 0.02
SOX3P41225 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
SOX3P41225 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SOX3P41225 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
SOX3P41225 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
SOX3P41225 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
SOX3P41225 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
SOX3P41225 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SOX3P41225 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC15.19■□□□□ 0.02
SOX3P41225 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC15.19■□□□□ 0.02
SOX3P41225 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
SOX3P41225 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SOX3P41225 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC15.19■□□□□ 0.02
SOX3P41225 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
SOX3P41225 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
SOX3P41225 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
SOX3P41225 AC073439.1-201ENST00000624121 1774 ntBASIC15.19■□□□□ 0.02
SOX3P41225 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SOX3P41225 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SOX3P41225 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SOX3P41225 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SOX3P41225 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
SOX3P41225 MIR346-201ENST00000362234 95 ntBASIC15.19■□□□□ 0.02
SOX3P41225 PNMT-202ENST00000394246 821 ntTSL 2 BASIC15.19■□□□□ 0.02
SOX3P41225 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC15.19■□□□□ 0.02
SOX3P41225 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
SOX3P41225 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC15.19■□□□□ 0.02
SOX3P41225 QPRT-203ENST00000562473 579 ntTSL 3 BASIC15.19■□□□□ 0.02
SOX3P41225 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC15.19■□□□□ 0.02
SOX3P41225 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SOX3P41225 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SOX3P41225 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC15.19■□□□□ 0.02
SOX3P41225 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SOX3P41225 GGT4P-201ENST00000623672 1708 ntBASIC15.19■□□□□ 0.02
SOX3P41225 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SOX3P41225 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SOX3P41225 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
SOX3P41225 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
SOX3P41225 ACE-204ENST00000428043 5120 ntTSL 2 BASIC15.19■□□□□ 0.02
SOX3P41225 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SOX3P41225 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
SOX3P41225 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
SOX3P41225 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SOX3P41225 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC15.18■□□□□ 0.02
SOX3P41225 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
SOX3P41225 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SOX3P41225 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SOX3P41225 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
SOX3P41225 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC15.18■□□□□ 0.02
SOX3P41225 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SOX3P41225 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SOX3P41225 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
SOX3P41225 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC15.18■□□□□ 0.02
SOX3P41225 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SOX3P41225 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SOX3P41225 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SOX3P41225 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
SOX3P41225 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
SOX3P41225 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
SOX3P41225 AC010491.1-201ENST00000563101 2797 ntBASIC15.18■□□□□ 0.02
SOX3P41225 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SOX3P41225 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
SOX3P41225 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
SOX3P41225 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
SOX3P41225 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC15.18■□□□□ 0.02
SOX3P41225 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
SOX3P41225 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SOX3P41225 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
SOX3P41225 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
SOX3P41225 RPL30-202ENST00000396070 440 ntTSL 2 BASIC15.18■□□□□ 0.02
SOX3P41225 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC15.18■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms