Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 PI4KAP1-204ENST00000612579 1703 ntBASIC16.24■□□□□ 0.19
PTPN4P29074 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC16.24■□□□□ 0.19
PTPN4P29074 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC16.24■□□□□ 0.19
PTPN4P29074 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTPN4P29074 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
PTPN4P29074 CICP13-201ENST00000422015 2789 ntBASIC16.24■□□□□ 0.19
PTPN4P29074 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTPN4P29074 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
PTPN4P29074 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTPN4P29074 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PTPN4P29074 POLL-217ENST00000628479 1953 ntTSL 5 BASIC16.24■□□□□ 0.19
PTPN4P29074 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTPN4P29074 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTPN4P29074 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTPN4P29074 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC16.23■□□□□ 0.19
PTPN4P29074 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC16.23■□□□□ 0.19
PTPN4P29074 BCAR1-209ENST00000546196 1340 ntBASIC16.23■□□□□ 0.19
PTPN4P29074 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
PTPN4P29074 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC16.23■□□□□ 0.19
PTPN4P29074 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC16.23■□□□□ 0.19
PTPN4P29074 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC16.23■□□□□ 0.19
PTPN4P29074 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PTPN4P29074 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
PTPN4P29074 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTPN4P29074 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC16.23■□□□□ 0.19
PTPN4P29074 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC16.23■□□□□ 0.19
PTPN4P29074 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC16.23■□□□□ 0.19
PTPN4P29074 SMN2-210ENST00000511812 867 ntTSL 2 BASIC16.23■□□□□ 0.19
PTPN4P29074 PDPK2P-202ENST00000562415 1191 ntBASIC16.23■□□□□ 0.19
PTPN4P29074 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC16.23■□□□□ 0.19
PTPN4P29074 AC027796.2-201ENST00000575326 344 ntBASIC16.23■□□□□ 0.19
PTPN4P29074 OR7E47P-204ENST00000575924 449 ntBASIC16.23■□□□□ 0.19
PTPN4P29074 AC013467.2-201ENST00000605472 835 ntBASIC16.23■□□□□ 0.19
PTPN4P29074 AL078644.1-201ENST00000609881 752 ntBASIC16.23■□□□□ 0.19
PTPN4P29074 AQP6-205ENST00000618286 829 ntTSL 5 BASIC16.23■□□□□ 0.19
PTPN4P29074 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
PTPN4P29074 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTPN4P29074 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PTPN4P29074 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTPN4P29074 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC16.23■□□□□ 0.19
PTPN4P29074 AC016027.1-202ENST00000607927 1699 ntBASIC16.23■□□□□ 0.19
PTPN4P29074 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC16.23■□□□□ 0.19
PTPN4P29074 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTPN4P29074 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTPN4P29074 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTPN4P29074 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTPN4P29074 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTPN4P29074 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PTPN4P29074 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTPN4P29074 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC16.23■□□□□ 0.19
PTPN4P29074 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTPN4P29074 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC16.22■□□□□ 0.19
PTPN4P29074 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC16.22■□□□□ 0.19
PTPN4P29074 KRT18P28-201ENST00000453838 1332 ntBASIC16.22■□□□□ 0.19
PTPN4P29074 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTPN4P29074 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTPN4P29074 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
PTPN4P29074 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTPN4P29074 SNX18-202ENST00000343017 3140 ntBASIC16.22■□□□□ 0.19
PTPN4P29074 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTPN4P29074 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PTPN4P29074 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTPN4P29074 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
PTPN4P29074 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTPN4P29074 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PTPN4P29074 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PTPN4P29074 CD82-202ENST00000342935 967 ntTSL 5 BASIC16.22■□□□□ 0.19
PTPN4P29074 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTPN4P29074 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC16.22■□□□□ 0.19
PTPN4P29074 KRT19P2-202ENST00000557173 1012 ntBASIC16.22■□□□□ 0.19
PTPN4P29074 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC16.22■□□□□ 0.19
PTPN4P29074 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC16.22■□□□□ 0.19
PTPN4P29074 RPS15-207ENST00000591032 550 ntTSL 3 BASIC16.22■□□□□ 0.19
PTPN4P29074 AL355385.1-201ENST00000606123 409 ntBASIC16.22■□□□□ 0.19
PTPN4P29074 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC16.22■□□□□ 0.19
PTPN4P29074 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTPN4P29074 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC16.22■□□□□ 0.19
PTPN4P29074 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
PTPN4P29074 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTPN4P29074 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTPN4P29074 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC16.22■□□□□ 0.19
PTPN4P29074 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC16.22■□□□□ 0.19
PTPN4P29074 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
PTPN4P29074 AC006277.1-201ENST00000624348 1610 ntBASIC16.22■□□□□ 0.19
PTPN4P29074 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTPN4P29074 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC16.22■□□□□ 0.19
PTPN4P29074 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTPN4P29074 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTPN4P29074 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC16.22■□□□□ 0.19
PTPN4P29074 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
PTPN4P29074 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PTPN4P29074 PC-214ENST00000628663 1470 ntTSL 5 BASIC16.22■□□□□ 0.19
PTPN4P29074 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PTPN4P29074 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC16.22■□□□□ 0.19
PTPN4P29074 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
PTPN4P29074 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTPN4P29074 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC16.22■□□□□ 0.19
PTPN4P29074 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
PTPN4P29074 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PTPN4P29074 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 58 ms