Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
CSB-PGBD3P0DP91 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
CSB-PGBD3P0DP91 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CSB-PGBD3P0DP91 ZBTB45P2-201ENST00000452245 1531 ntBASIC21.14■□□□□ 0.97
CSB-PGBD3P0DP91 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CSB-PGBD3P0DP91 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
CSB-PGBD3P0DP91 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CSB-PGBD3P0DP91 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC21.13■□□□□ 0.97
CSB-PGBD3P0DP91 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CSB-PGBD3P0DP91 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CSB-PGBD3P0DP91 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CSB-PGBD3P0DP91 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CSB-PGBD3P0DP91 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CSB-PGBD3P0DP91 RNF216P1-203ENST00000404404 2427 ntBASIC21.13■□□□□ 0.97
CSB-PGBD3P0DP91 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC21.13■□□□□ 0.97
CSB-PGBD3P0DP91 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CSB-PGBD3P0DP91 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
CSB-PGBD3P0DP91 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CSB-PGBD3P0DP91 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC21.13■□□□□ 0.97
CSB-PGBD3P0DP91 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC21.13■□□□□ 0.97
CSB-PGBD3P0DP91 AC012441.1-201ENST00000446669 685 ntBASIC21.13■□□□□ 0.97
CSB-PGBD3P0DP91 AC093433.1-201ENST00000458048 571 ntBASIC21.13■□□□□ 0.97
CSB-PGBD3P0DP91 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC21.13■□□□□ 0.97
CSB-PGBD3P0DP91 RIT1-205ENST00000539040 919 ntTSL 2 BASIC21.13■□□□□ 0.97
CSB-PGBD3P0DP91 DERL2-202ENST00000570848 657 ntTSL 5 BASIC21.13■□□□□ 0.97
CSB-PGBD3P0DP91 MIR3615-201ENST00000581999 87 ntBASIC21.13■□□□□ 0.97
CSB-PGBD3P0DP91 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC21.13■□□□□ 0.97
CSB-PGBD3P0DP91 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
CSB-PGBD3P0DP91 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC21.13■□□□□ 0.97
CSB-PGBD3P0DP91 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC21.13■□□□□ 0.97
CSB-PGBD3P0DP91 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CSB-PGBD3P0DP91 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CSB-PGBD3P0DP91 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC21.13■□□□□ 0.97
CSB-PGBD3P0DP91 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC21.13■□□□□ 0.97
CSB-PGBD3P0DP91 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC21.13■□□□□ 0.97
CSB-PGBD3P0DP91 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CSB-PGBD3P0DP91 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
CSB-PGBD3P0DP91 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CSB-PGBD3P0DP91 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
CSB-PGBD3P0DP91 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
CSB-PGBD3P0DP91 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CSB-PGBD3P0DP91 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CSB-PGBD3P0DP91 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CSB-PGBD3P0DP91 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CSB-PGBD3P0DP91 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
CSB-PGBD3P0DP91 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
CSB-PGBD3P0DP91 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
CSB-PGBD3P0DP91 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CSB-PGBD3P0DP91 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CSB-PGBD3P0DP91 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
CSB-PGBD3P0DP91 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CSB-PGBD3P0DP91 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CSB-PGBD3P0DP91 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC21.12■□□□□ 0.97
CSB-PGBD3P0DP91 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC21.12■□□□□ 0.97
CSB-PGBD3P0DP91 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CSB-PGBD3P0DP91 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
CSB-PGBD3P0DP91 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC21.12■□□□□ 0.97
CSB-PGBD3P0DP91 AC026954.1-201ENST00000429771 1293 ntBASIC21.12■□□□□ 0.97
CSB-PGBD3P0DP91 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC21.12■□□□□ 0.97
CSB-PGBD3P0DP91 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC21.12■□□□□ 0.97
CSB-PGBD3P0DP91 RPL13AP20-201ENST00000459725 609 ntBASIC21.12■□□□□ 0.97
CSB-PGBD3P0DP91 TPI1-206ENST00000488464 791 ntTSL 5 BASIC21.12■□□□□ 0.97
CSB-PGBD3P0DP91 EMC4-209ENST00000559421 497 ntTSL 2 BASIC21.12■□□□□ 0.97
CSB-PGBD3P0DP91 AP001063.1-201ENST00000568332 529 ntBASIC21.12■□□□□ 0.97
CSB-PGBD3P0DP91 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CSB-PGBD3P0DP91 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
CSB-PGBD3P0DP91 AC005252.2-201ENST00000624630 1141 ntBASIC21.12■□□□□ 0.97
CSB-PGBD3P0DP91 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CSB-PGBD3P0DP91 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CSB-PGBD3P0DP91 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CSB-PGBD3P0DP91 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CSB-PGBD3P0DP91 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
CSB-PGBD3P0DP91 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC21.12■□□□□ 0.97
CSB-PGBD3P0DP91 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC21.12■□□□□ 0.97
CSB-PGBD3P0DP91 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC21.12■□□□□ 0.97
CSB-PGBD3P0DP91 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
CSB-PGBD3P0DP91 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CSB-PGBD3P0DP91 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CSB-PGBD3P0DP91 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CSB-PGBD3P0DP91 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CSB-PGBD3P0DP91 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CSB-PGBD3P0DP91 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC21.11■□□□□ 0.97
CSB-PGBD3P0DP91 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CSB-PGBD3P0DP91 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CSB-PGBD3P0DP91 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC21.11■□□□□ 0.97
CSB-PGBD3P0DP91 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
CSB-PGBD3P0DP91 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC21.11■□□□□ 0.97
CSB-PGBD3P0DP91 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CSB-PGBD3P0DP91 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC21.11■□□□□ 0.97
CSB-PGBD3P0DP91 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CSB-PGBD3P0DP91 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CSB-PGBD3P0DP91 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
CSB-PGBD3P0DP91 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC21.11■□□□□ 0.97
CSB-PGBD3P0DP91 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC21.11■□□□□ 0.97
CSB-PGBD3P0DP91 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC21.11■□□□□ 0.97
CSB-PGBD3P0DP91 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CSB-PGBD3P0DP91 AC079316.1-201ENST00000548397 411 ntBASIC21.11■□□□□ 0.97
CSB-PGBD3P0DP91 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CSB-PGBD3P0DP91 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.97
CSB-PGBD3P0DP91 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms