Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLPTM1O96005 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CLPTM1O96005 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLPTM1O96005 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLPTM1O96005 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLPTM1O96005 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLPTM1O96005 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLPTM1O96005 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLPTM1O96005 MEG3-211ENST00000452514 461 ntTSL 3 BASIC15.28■□□□□ 0.04
CLPTM1O96005 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CLPTM1O96005 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC15.28■□□□□ 0.04
CLPTM1O96005 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLPTM1O96005 KRT126P-201ENST00000549467 1181 ntBASIC15.28■□□□□ 0.04
CLPTM1O96005 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC15.28■□□□□ 0.04
CLPTM1O96005 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
CLPTM1O96005 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLPTM1O96005 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC15.28■□□□□ 0.04
CLPTM1O96005 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLPTM1O96005 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CLPTM1O96005 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLPTM1O96005 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLPTM1O96005 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
CLPTM1O96005 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
CLPTM1O96005 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
CLPTM1O96005 AC005252.3-201ENST00000623855 2258 ntBASIC15.28■□□□□ 0.04
CLPTM1O96005 PTENP1-202ENST00000532280 3996 ntBASIC15.28■□□□□ 0.04
CLPTM1O96005 AL135999.2-201ENST00000622438 1686 ntBASIC15.28■□□□□ 0.04
CLPTM1O96005 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC15.28■□□□□ 0.04
CLPTM1O96005 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CLPTM1O96005 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC15.28■□□□□ 0.04
CLPTM1O96005 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
CLPTM1O96005 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLPTM1O96005 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLPTM1O96005 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLPTM1O96005 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLPTM1O96005 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CLPTM1O96005 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLPTM1O96005 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC15.27■□□□□ 0.04
CLPTM1O96005 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLPTM1O96005 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLPTM1O96005 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
CLPTM1O96005 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
CLPTM1O96005 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLPTM1O96005 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC15.27■□□□□ 0.04
CLPTM1O96005 AL021920.2-201ENST00000624828 1351 ntBASIC15.27■□□□□ 0.04
CLPTM1O96005 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC15.27■□□□□ 0.04
CLPTM1O96005 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLPTM1O96005 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLPTM1O96005 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLPTM1O96005 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLPTM1O96005 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
CLPTM1O96005 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLPTM1O96005 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC15.27■□□□□ 0.04
CLPTM1O96005 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC15.27■□□□□ 0.04
CLPTM1O96005 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
CLPTM1O96005 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC15.27■□□□□ 0.04
CLPTM1O96005 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC15.27■□□□□ 0.04
CLPTM1O96005 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC15.27■□□□□ 0.04
CLPTM1O96005 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CLPTM1O96005 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLPTM1O96005 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
CLPTM1O96005 CCNC-219ENST00000627680 896 ntTSL 5 BASIC15.27■□□□□ 0.04
CLPTM1O96005 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
CLPTM1O96005 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
CLPTM1O96005 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC15.27■□□□□ 0.03
CLPTM1O96005 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
CLPTM1O96005 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
CLPTM1O96005 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
CLPTM1O96005 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CLPTM1O96005 TBC1D3P5-201ENST00000579401 1545 ntBASIC15.27■□□□□ 0.03
CLPTM1O96005 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC15.27■□□□□ 0.03
CLPTM1O96005 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC15.27■□□□□ 0.03
CLPTM1O96005 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC15.27■□□□□ 0.03
CLPTM1O96005 TP73-AS1-210ENST00000637775 1455 ntBASIC15.27■□□□□ 0.03
CLPTM1O96005 MARS-233ENST00000628866 2583 ntTSL 5 BASIC15.27■□□□□ 0.03
CLPTM1O96005 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC15.27■□□□□ 0.03
CLPTM1O96005 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC15.26■□□□□ 0.03
CLPTM1O96005 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC15.26■□□□□ 0.03
CLPTM1O96005 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
CLPTM1O96005 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC15.26■□□□□ 0.03
CLPTM1O96005 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC15.26■□□□□ 0.03
CLPTM1O96005 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLPTM1O96005 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC15.26■□□□□ 0.03
CLPTM1O96005 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
CLPTM1O96005 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC15.26■□□□□ 0.03
CLPTM1O96005 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLPTM1O96005 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC15.26■□□□□ 0.03
CLPTM1O96005 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLPTM1O96005 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLPTM1O96005 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC15.26■□□□□ 0.03
CLPTM1O96005 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC15.26■□□□□ 0.03
CLPTM1O96005 ARHGAP23P1-201ENST00000562773 1937 ntBASIC15.26■□□□□ 0.03
CLPTM1O96005 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLPTM1O96005 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLPTM1O96005 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLPTM1O96005 RCN1P2-201ENST00000398357 915 ntBASIC15.26■□□□□ 0.03
CLPTM1O96005 AL450487.1-201ENST00000426799 995 ntBASIC15.26■□□□□ 0.03
CLPTM1O96005 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC15.26■□□□□ 0.03
CLPTM1O96005 KRT18P31-201ENST00000506277 1292 ntBASIC15.26■□□□□ 0.03
CLPTM1O96005 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 192.1 ms