Protein–RNA interactions for Protein: Q9H9A6

LRRC40, Leucine-rich repeat-containing protein 40, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40Q9H9A6 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LRRC40Q9H9A6 ING5-213ENST00000636051 4199 ntTSL 5 BASIC16.38■□□□□ 0.21
LRRC40Q9H9A6 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC16.38■□□□□ 0.21
LRRC40Q9H9A6 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC16.38■□□□□ 0.21
LRRC40Q9H9A6 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LRRC40Q9H9A6 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
LRRC40Q9H9A6 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LRRC40Q9H9A6 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LRRC40Q9H9A6 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC16.37■□□□□ 0.21
LRRC40Q9H9A6 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
LRRC40Q9H9A6 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
LRRC40Q9H9A6 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LRRC40Q9H9A6 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LRRC40Q9H9A6 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LRRC40Q9H9A6 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LRRC40Q9H9A6 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC16.37■□□□□ 0.21
LRRC40Q9H9A6 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC16.37■□□□□ 0.21
LRRC40Q9H9A6 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LRRC40Q9H9A6 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
LRRC40Q9H9A6 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LRRC40Q9H9A6 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC16.37■□□□□ 0.21
LRRC40Q9H9A6 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
LRRC40Q9H9A6 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC16.37■□□□□ 0.21
LRRC40Q9H9A6 MIR346-201ENST00000362234 95 ntBASIC16.37■□□□□ 0.21
LRRC40Q9H9A6 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LRRC40Q9H9A6 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LRRC40Q9H9A6 HTR5BP-201ENST00000430851 1154 ntBASIC16.37■□□□□ 0.21
LRRC40Q9H9A6 TIMM8BP1-201ENST00000452384 211 ntBASIC16.37■□□□□ 0.21
LRRC40Q9H9A6 KRT8P48-201ENST00000515599 1220 ntBASIC16.37■□□□□ 0.21
LRRC40Q9H9A6 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC16.37■□□□□ 0.21
LRRC40Q9H9A6 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC16.37■□□□□ 0.21
LRRC40Q9H9A6 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC16.37■□□□□ 0.21
LRRC40Q9H9A6 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC16.37■□□□□ 0.21
LRRC40Q9H9A6 PAM16-215ENST00000577031 548 ntTSL 4 BASIC16.37■□□□□ 0.21
LRRC40Q9H9A6 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC16.37■□□□□ 0.21
LRRC40Q9H9A6 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
LRRC40Q9H9A6 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC16.37■□□□□ 0.21
LRRC40Q9H9A6 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
LRRC40Q9H9A6 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LRRC40Q9H9A6 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LRRC40Q9H9A6 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
LRRC40Q9H9A6 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
LRRC40Q9H9A6 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LRRC40Q9H9A6 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LRRC40Q9H9A6 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LRRC40Q9H9A6 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LRRC40Q9H9A6 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LRRC40Q9H9A6 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LRRC40Q9H9A6 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
LRRC40Q9H9A6 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
LRRC40Q9H9A6 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC16.36■□□□□ 0.21
LRRC40Q9H9A6 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LRRC40Q9H9A6 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
LRRC40Q9H9A6 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
LRRC40Q9H9A6 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LRRC40Q9H9A6 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
LRRC40Q9H9A6 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
LRRC40Q9H9A6 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
LRRC40Q9H9A6 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC16.36■□□□□ 0.21
LRRC40Q9H9A6 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LRRC40Q9H9A6 FAM220BP-201ENST00000377689 816 ntBASIC16.36■□□□□ 0.21
LRRC40Q9H9A6 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LRRC40Q9H9A6 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC16.36■□□□□ 0.21
LRRC40Q9H9A6 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC16.36■□□□□ 0.21
LRRC40Q9H9A6 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC16.36■□□□□ 0.21
LRRC40Q9H9A6 RNA5SP410-201ENST00000516285 106 ntBASIC16.36■□□□□ 0.21
LRRC40Q9H9A6 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC16.36■□□□□ 0.21
LRRC40Q9H9A6 LINC01225-203ENST00000563550 1244 ntBASIC16.36■□□□□ 0.21
LRRC40Q9H9A6 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC16.36■□□□□ 0.21
LRRC40Q9H9A6 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC16.36■□□□□ 0.21
LRRC40Q9H9A6 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
LRRC40Q9H9A6 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC16.36■□□□□ 0.21
LRRC40Q9H9A6 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC16.36■□□□□ 0.21
LRRC40Q9H9A6 AL671883.3-201ENST00000603274 991 ntBASIC16.36■□□□□ 0.21
LRRC40Q9H9A6 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC16.36■□□□□ 0.21
LRRC40Q9H9A6 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC16.36■□□□□ 0.21
LRRC40Q9H9A6 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC16.36■□□□□ 0.21
LRRC40Q9H9A6 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LRRC40Q9H9A6 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC16.36■□□□□ 0.21
LRRC40Q9H9A6 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
LRRC40Q9H9A6 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LRRC40Q9H9A6 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC16.36■□□□□ 0.21
LRRC40Q9H9A6 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
LRRC40Q9H9A6 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC16.35■□□□□ 0.21
LRRC40Q9H9A6 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LRRC40Q9H9A6 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
LRRC40Q9H9A6 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC16.35■□□□□ 0.21
LRRC40Q9H9A6 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LRRC40Q9H9A6 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
LRRC40Q9H9A6 MBP-202ENST00000355994 2772 ntTSL 5 BASIC16.35■□□□□ 0.21
LRRC40Q9H9A6 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
LRRC40Q9H9A6 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LRRC40Q9H9A6 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC16.35■□□□□ 0.21
LRRC40Q9H9A6 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LRRC40Q9H9A6 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LRRC40Q9H9A6 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
LRRC40Q9H9A6 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
LRRC40Q9H9A6 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LRRC40Q9H9A6 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
LRRC40Q9H9A6 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC16.35■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms