Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 PRYP6-201ENST00000514804 343 ntBASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 MIR4321-201ENST00000592276 80 ntBASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 API5-202ENST00000420461 2009 ntTSL 2 BASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC16.71■□□□□ 0.27
ATG4AQ8WYN0 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC16.71■□□□□ 0.27
ATG4AQ8WYN0 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
ATG4AQ8WYN0 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
ATG4AQ8WYN0 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
ATG4AQ8WYN0 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
ATG4AQ8WYN0 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
ATG4AQ8WYN0 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
ATG4AQ8WYN0 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC16.71■□□□□ 0.27
ATG4AQ8WYN0 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
ATG4AQ8WYN0 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
ATG4AQ8WYN0 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
ATG4AQ8WYN0 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
ATG4AQ8WYN0 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
ATG4AQ8WYN0 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC16.71■□□□□ 0.27
ATG4AQ8WYN0 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
ATG4AQ8WYN0 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
ATG4AQ8WYN0 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC16.71■□□□□ 0.27
ATG4AQ8WYN0 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC16.71■□□□□ 0.27
ATG4AQ8WYN0 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC16.71■□□□□ 0.27
ATG4AQ8WYN0 PENK-208ENST00000523051 772 ntTSL 5 BASIC16.71■□□□□ 0.27
ATG4AQ8WYN0 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC16.71■□□□□ 0.27
ATG4AQ8WYN0 AL662844.1-201ENST00000546340 181 ntBASIC16.71■□□□□ 0.27
ATG4AQ8WYN0 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC16.71■□□□□ 0.27
ATG4AQ8WYN0 FHL2-212ENST00000607522 759 ntTSL 2 BASIC16.71■□□□□ 0.27
ATG4AQ8WYN0 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC16.71■□□□□ 0.27
ATG4AQ8WYN0 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
ATG4AQ8WYN0 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
ATG4AQ8WYN0 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC16.71■□□□□ 0.27
ATG4AQ8WYN0 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
ATG4AQ8WYN0 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
ATG4AQ8WYN0 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
ATG4AQ8WYN0 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
ATG4AQ8WYN0 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
ATG4AQ8WYN0 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
ATG4AQ8WYN0 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC16.71■□□□□ 0.27
ATG4AQ8WYN0 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
ATG4AQ8WYN0 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC16.71■□□□□ 0.26
ATG4AQ8WYN0 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
ATG4AQ8WYN0 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
ATG4AQ8WYN0 LINC02228-204ENST00000642115 2962 ntBASIC16.71■□□□□ 0.26
ATG4AQ8WYN0 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.26
ATG4AQ8WYN0 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC16.71■□□□□ 0.26
ATG4AQ8WYN0 PMS2P7-201ENST00000506558 1336 ntBASIC16.7■□□□□ 0.26
ATG4AQ8WYN0 WASH6P-202ENST00000359512 1437 ntBASIC16.7■□□□□ 0.26
ATG4AQ8WYN0 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
ATG4AQ8WYN0 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
ATG4AQ8WYN0 BID-213ENST00000615414 2236 ntTSL 5 BASIC16.7■□□□□ 0.26
ATG4AQ8WYN0 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
ATG4AQ8WYN0 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ATG4AQ8WYN0 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ATG4AQ8WYN0 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ATG4AQ8WYN0 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC16.7■□□□□ 0.26
ATG4AQ8WYN0 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ATG4AQ8WYN0 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
ATG4AQ8WYN0 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
ATG4AQ8WYN0 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms