Protein–RNA interactions for Protein: Q8TCU4

ALMS1, Alstrom syndrome protein 1, humanhuman

Predictions only

Length 4,167 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1Q8TCU4 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC10.59□□□□□ -0.71
ALMS1Q8TCU4 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC10.59□□□□□ -0.71
ALMS1Q8TCU4 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC10.59□□□□□ -0.71
ALMS1Q8TCU4 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
ALMS1Q8TCU4 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
ALMS1Q8TCU4 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC10.59□□□□□ -0.71
ALMS1Q8TCU4 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
ALMS1Q8TCU4 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC10.59□□□□□ -0.71
ALMS1Q8TCU4 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC10.59□□□□□ -0.71
ALMS1Q8TCU4 Z97180.1-201ENST00000445173 988 ntBASIC10.59□□□□□ -0.71
ALMS1Q8TCU4 AL596276.2-201ENST00000447525 331 ntBASIC10.59□□□□□ -0.71
ALMS1Q8TCU4 OARD1-204ENST00000464633 717 ntTSL 2 BASIC10.59□□□□□ -0.71
ALMS1Q8TCU4 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC10.59□□□□□ -0.71
ALMS1Q8TCU4 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC10.59□□□□□ -0.71
ALMS1Q8TCU4 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC10.59□□□□□ -0.71
ALMS1Q8TCU4 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC10.59□□□□□ -0.71
ALMS1Q8TCU4 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC10.59□□□□□ -0.71
ALMS1Q8TCU4 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC10.59□□□□□ -0.71
ALMS1Q8TCU4 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC10.59□□□□□ -0.71
ALMS1Q8TCU4 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC10.59□□□□□ -0.71
ALMS1Q8TCU4 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC10.59□□□□□ -0.71
ALMS1Q8TCU4 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC10.59□□□□□ -0.71
ALMS1Q8TCU4 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC10.59□□□□□ -0.71
ALMS1Q8TCU4 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC10.59□□□□□ -0.71
ALMS1Q8TCU4 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC10.59□□□□□ -0.71
ALMS1Q8TCU4 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC10.59□□□□□ -0.71
ALMS1Q8TCU4 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC10.59□□□□□ -0.71
ALMS1Q8TCU4 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
ALMS1Q8TCU4 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC10.59□□□□□ -0.71
ALMS1Q8TCU4 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC10.59□□□□□ -0.71
ALMS1Q8TCU4 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC10.59□□□□□ -0.71
ALMS1Q8TCU4 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC10.59□□□□□ -0.71
ALMS1Q8TCU4 PDIA3P2-201ENST00000428073 158 ntBASIC10.59□□□□□ -0.71
ALMS1Q8TCU4 AC134043.2-201ENST00000624206 2238 ntBASIC10.59□□□□□ -0.71
ALMS1Q8TCU4 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC10.59□□□□□ -0.71
ALMS1Q8TCU4 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC10.59□□□□□ -0.71
ALMS1Q8TCU4 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
ALMS1Q8TCU4 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
ALMS1Q8TCU4 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
ALMS1Q8TCU4 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC10.59□□□□□ -0.71
ALMS1Q8TCU4 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC10.59□□□□□ -0.71
ALMS1Q8TCU4 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC10.58□□□□□ -0.71
ALMS1Q8TCU4 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.71
ALMS1Q8TCU4 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.71
ALMS1Q8TCU4 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.71
ALMS1Q8TCU4 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC10.58□□□□□ -0.71
ALMS1Q8TCU4 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC10.58□□□□□ -0.71
ALMS1Q8TCU4 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.71
ALMS1Q8TCU4 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC10.58□□□□□ -0.71
ALMS1Q8TCU4 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC10.58□□□□□ -0.71
ALMS1Q8TCU4 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC10.58□□□□□ -0.71
ALMS1Q8TCU4 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC10.58□□□□□ -0.71
ALMS1Q8TCU4 MIR3147-201ENST00000577811 66 ntBASIC10.58□□□□□ -0.71
ALMS1Q8TCU4 MIR4750-201ENST00000584564 56 ntBASIC10.58□□□□□ -0.71
ALMS1Q8TCU4 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC10.58□□□□□ -0.71
ALMS1Q8TCU4 HLA-C-210ENST00000640219 976 ntBASIC10.58□□□□□ -0.71
ALMS1Q8TCU4 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC10.58□□□□□ -0.72
ALMS1Q8TCU4 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC10.58□□□□□ -0.72
ALMS1Q8TCU4 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
ALMS1Q8TCU4 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
ALMS1Q8TCU4 AP001282.1-201ENST00000531301 1499 ntBASIC10.58□□□□□ -0.72
ALMS1Q8TCU4 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC10.58□□□□□ -0.72
ALMS1Q8TCU4 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC10.58□□□□□ -0.72
ALMS1Q8TCU4 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
ALMS1Q8TCU4 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC10.58□□□□□ -0.72
ALMS1Q8TCU4 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC10.58□□□□□ -0.72
ALMS1Q8TCU4 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC10.58□□□□□ -0.72
ALMS1Q8TCU4 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC10.58□□□□□ -0.72
ALMS1Q8TCU4 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC10.58□□□□□ -0.72
ALMS1Q8TCU4 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC10.58□□□□□ -0.72
ALMS1Q8TCU4 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC10.58□□□□□ -0.72
ALMS1Q8TCU4 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC10.58□□□□□ -0.72
ALMS1Q8TCU4 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC10.58□□□□□ -0.72
ALMS1Q8TCU4 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC10.58□□□□□ -0.72
ALMS1Q8TCU4 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC10.58□□□□□ -0.72
ALMS1Q8TCU4 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC10.58□□□□□ -0.72
ALMS1Q8TCU4 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC10.58□□□□□ -0.72
ALMS1Q8TCU4 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
ALMS1Q8TCU4 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
ALMS1Q8TCU4 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC10.58□□□□□ -0.72
ALMS1Q8TCU4 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
ALMS1Q8TCU4 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC10.58□□□□□ -0.72
ALMS1Q8TCU4 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC10.58□□□□□ -0.72
ALMS1Q8TCU4 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
ALMS1Q8TCU4 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
ALMS1Q8TCU4 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
ALMS1Q8TCU4 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC10.58□□□□□ -0.72
ALMS1Q8TCU4 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
ALMS1Q8TCU4 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC10.58□□□□□ -0.72
ALMS1Q8TCU4 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC10.58□□□□□ -0.72
ALMS1Q8TCU4 RPSAP31-201ENST00000416648 895 ntBASIC10.58□□□□□ -0.72
ALMS1Q8TCU4 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
ALMS1Q8TCU4 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC10.58□□□□□ -0.72
ALMS1Q8TCU4 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC10.58□□□□□ -0.72
ALMS1Q8TCU4 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
ALMS1Q8TCU4 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC10.58□□□□□ -0.72
ALMS1Q8TCU4 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
ALMS1Q8TCU4 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
ALMS1Q8TCU4 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
ALMS1Q8TCU4 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms