Protein–RNA interactions for Protein: P57078

RIPK4, Receptor-interacting serine/threonine-protein kinase 4, humanhuman

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK4P57078 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC21.01■□□□□ 0.95
RIPK4P57078 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC21.01■□□□□ 0.95
RIPK4P57078 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RIPK4P57078 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC21.01■□□□□ 0.95
RIPK4P57078 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC21.01■□□□□ 0.95
RIPK4P57078 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
RIPK4P57078 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RIPK4P57078 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RIPK4P57078 RAD18-204ENST00000418463 563 ntTSL 4 BASIC21.01■□□□□ 0.95
RIPK4P57078 RAD18-205ENST00000421052 582 ntTSL 3 BASIC21.01■□□□□ 0.95
RIPK4P57078 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC21.01■□□□□ 0.95
RIPK4P57078 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC21.01■□□□□ 0.95
RIPK4P57078 ZNF890P-202ENST00000530367 1156 ntBASIC21.01■□□□□ 0.95
RIPK4P57078 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
RIPK4P57078 PRR29-204ENST00000577953 565 ntTSL 4 BASIC21.01■□□□□ 0.95
RIPK4P57078 RN7SL204P-201ENST00000582831 262 ntBASIC21.01■□□□□ 0.95
RIPK4P57078 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC21.01■□□□□ 0.95
RIPK4P57078 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RIPK4P57078 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RIPK4P57078 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RIPK4P57078 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RIPK4P57078 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RIPK4P57078 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
RIPK4P57078 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RIPK4P57078 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RIPK4P57078 ACE-204ENST00000428043 5120 ntTSL 2 BASIC21■□□□□ 0.95
RIPK4P57078 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RIPK4P57078 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
RIPK4P57078 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC21■□□□□ 0.95
RIPK4P57078 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RIPK4P57078 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RIPK4P57078 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RIPK4P57078 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC21■□□□□ 0.95
RIPK4P57078 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC21■□□□□ 0.95
RIPK4P57078 AC236430.1-201ENST00000402231 743 ntBASIC21■□□□□ 0.95
RIPK4P57078 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC21■□□□□ 0.95
RIPK4P57078 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC21■□□□□ 0.95
RIPK4P57078 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
RIPK4P57078 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC21■□□□□ 0.95
RIPK4P57078 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
RIPK4P57078 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC21■□□□□ 0.95
RIPK4P57078 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC21■□□□□ 0.95
RIPK4P57078 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC21■□□□□ 0.95
RIPK4P57078 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC21■□□□□ 0.95
RIPK4P57078 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC21■□□□□ 0.95
RIPK4P57078 TEX48-202ENST00000612244 662 ntTSL 3 BASIC21■□□□□ 0.95
RIPK4P57078 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
RIPK4P57078 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RIPK4P57078 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
RIPK4P57078 AC010491.1-201ENST00000563101 2797 ntBASIC21■□□□□ 0.95
RIPK4P57078 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
RIPK4P57078 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
RIPK4P57078 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC21■□□□□ 0.95
RIPK4P57078 LRRFIP1P1-201ENST00000498774 2246 ntBASIC21■□□□□ 0.95
RIPK4P57078 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RIPK4P57078 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC21■□□□□ 0.95
RIPK4P57078 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
RIPK4P57078 SUPT20HL2-201ENST00000486479 2409 ntBASIC20.99■□□□□ 0.95
RIPK4P57078 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC20.99■□□□□ 0.95
RIPK4P57078 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RIPK4P57078 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
RIPK4P57078 DOC2GP-204ENST00000639052 2548 ntBASIC20.99■□□□□ 0.95
RIPK4P57078 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC20.99■□□□□ 0.95
RIPK4P57078 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RIPK4P57078 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC20.99■□□□□ 0.95
RIPK4P57078 TMPRSS11CP-201ENST00000453277 683 ntBASIC20.99■□□□□ 0.95
RIPK4P57078 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RIPK4P57078 STOM-203ENST00000538954 1257 ntTSL 5 BASIC20.99■□□□□ 0.95
RIPK4P57078 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC20.99■□□□□ 0.95
RIPK4P57078 AL109936.8-201ENST00000641772 604 ntBASIC20.99■□□□□ 0.95
RIPK4P57078 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC20.99■□□□□ 0.95
RIPK4P57078 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RIPK4P57078 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RIPK4P57078 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RIPK4P57078 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC20.99■□□□□ 0.95
RIPK4P57078 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RIPK4P57078 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC20.99■□□□□ 0.95
RIPK4P57078 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC20.99■□□□□ 0.95
RIPK4P57078 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RIPK4P57078 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RIPK4P57078 AC112504.1-201ENST00000623415 1841 ntBASIC20.99■□□□□ 0.95
RIPK4P57078 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RIPK4P57078 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
RIPK4P57078 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RIPK4P57078 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RIPK4P57078 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC20.99■□□□□ 0.95
RIPK4P57078 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC20.98■□□□□ 0.95
RIPK4P57078 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
RIPK4P57078 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC20.98■□□□□ 0.95
RIPK4P57078 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RIPK4P57078 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RIPK4P57078 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
RIPK4P57078 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
RIPK4P57078 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
RIPK4P57078 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
RIPK4P57078 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RIPK4P57078 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
RIPK4P57078 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
RIPK4P57078 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC20.98■□□□□ 0.95
RIPK4P57078 AC002472.2-201ENST00000442739 958 ntBASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms