Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC16.91■□□□□ 0.3
COL4A4P53420 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
COL4A4P53420 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC16.91■□□□□ 0.3
COL4A4P53420 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
COL4A4P53420 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL4A4P53420 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
COL4A4P53420 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL4A4P53420 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL4A4P53420 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
COL4A4P53420 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
COL4A4P53420 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
COL4A4P53420 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC16.91■□□□□ 0.3
COL4A4P53420 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC16.91■□□□□ 0.3
COL4A4P53420 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC16.91■□□□□ 0.3
COL4A4P53420 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL4A4P53420 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL4A4P53420 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
COL4A4P53420 TOMM22P5-201ENST00000416399 439 ntBASIC16.91■□□□□ 0.3
COL4A4P53420 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC16.91■□□□□ 0.3
COL4A4P53420 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC16.91■□□□□ 0.3
COL4A4P53420 AL590640.2-201ENST00000457038 527 ntBASIC16.91■□□□□ 0.3
COL4A4P53420 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC16.91■□□□□ 0.3
COL4A4P53420 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC16.91■□□□□ 0.3
COL4A4P53420 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
COL4A4P53420 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
COL4A4P53420 MIR6727-201ENST00000620702 65 ntBASIC16.91■□□□□ 0.3
COL4A4P53420 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL4A4P53420 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC16.91■□□□□ 0.3
COL4A4P53420 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
COL4A4P53420 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
COL4A4P53420 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
COL4A4P53420 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL4A4P53420 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL4A4P53420 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC16.9■□□□□ 0.3
COL4A4P53420 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL4A4P53420 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL4A4P53420 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC16.9■□□□□ 0.3
COL4A4P53420 GCK-209ENST00000616242 2260 ntTSL 5 BASIC16.9■□□□□ 0.3
COL4A4P53420 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
COL4A4P53420 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL4A4P53420 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
COL4A4P53420 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC16.9■□□□□ 0.3
COL4A4P53420 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL4A4P53420 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC16.9■□□□□ 0.3
COL4A4P53420 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC16.9■□□□□ 0.3
COL4A4P53420 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
COL4A4P53420 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL4A4P53420 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL4A4P53420 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL4A4P53420 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
COL4A4P53420 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC16.9■□□□□ 0.3
COL4A4P53420 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC16.9■□□□□ 0.3
COL4A4P53420 RPL13AP25-201ENST00000484130 612 ntBASIC16.9■□□□□ 0.3
COL4A4P53420 AC022137.2-201ENST00000503482 481 ntBASIC16.9■□□□□ 0.3
COL4A4P53420 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC16.9■□□□□ 0.3
COL4A4P53420 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC16.9■□□□□ 0.3
COL4A4P53420 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
COL4A4P53420 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC16.9■□□□□ 0.3
COL4A4P53420 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC16.9■□□□□ 0.3
COL4A4P53420 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC16.9■□□□□ 0.3
COL4A4P53420 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
COL4A4P53420 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC16.9■□□□□ 0.3
COL4A4P53420 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC16.9■□□□□ 0.3
COL4A4P53420 AC134312.5-201ENST00000568031 1313 ntBASIC16.9■□□□□ 0.3
COL4A4P53420 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC16.9■□□□□ 0.3
COL4A4P53420 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC16.9■□□□□ 0.3
COL4A4P53420 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC16.9■□□□□ 0.3
COL4A4P53420 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL4A4P53420 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
COL4A4P53420 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC16.9■□□□□ 0.3
COL4A4P53420 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
COL4A4P53420 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL4A4P53420 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
COL4A4P53420 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC16.89■□□□□ 0.29
COL4A4P53420 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
COL4A4P53420 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL4A4P53420 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC16.89■□□□□ 0.29
COL4A4P53420 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL4A4P53420 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL4A4P53420 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC16.89■□□□□ 0.29
COL4A4P53420 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
COL4A4P53420 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COL4A4P53420 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL4A4P53420 MIR648-201ENST00000385046 94 ntBASIC16.89■□□□□ 0.29
COL4A4P53420 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL4A4P53420 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC16.89■□□□□ 0.29
COL4A4P53420 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
COL4A4P53420 FXR1-221ENST00000491674 365 ntTSL 2 BASIC16.89■□□□□ 0.29
COL4A4P53420 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL4A4P53420 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC16.89■□□□□ 0.29
COL4A4P53420 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC16.89■□□□□ 0.29
COL4A4P53420 LARP4-220ENST00000615080 856 ntTSL 5 BASIC16.89■□□□□ 0.29
COL4A4P53420 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC16.89■□□□□ 0.29
COL4A4P53420 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC16.89■□□□□ 0.29
COL4A4P53420 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL4A4P53420 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COL4A4P53420 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COL4A4P53420 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COL4A4P53420 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL4A4P53420 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC16.89■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 65.1 ms