Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CXCL1P09341 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC12.56□□□□□ -0.4
CXCL1P09341 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC12.55□□□□□ -0.4
CXCL1P09341 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
CXCL1P09341 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CXCL1P09341 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
CXCL1P09341 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
CXCL1P09341 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CXCL1P09341 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CXCL1P09341 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC12.55□□□□□ -0.4
CXCL1P09341 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CXCL1P09341 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CXCL1P09341 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
CXCL1P09341 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC12.55□□□□□ -0.4
CXCL1P09341 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CXCL1P09341 CARHSP1-216ENST00000610831 2841 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
CXCL1P09341 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CXCL1P09341 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CXCL1P09341 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC12.55□□□□□ -0.4
CXCL1P09341 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CXCL1P09341 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC12.55□□□□□ -0.4
CXCL1P09341 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
CXCL1P09341 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CXCL1P09341 HBZP1-201ENST00000354915 429 ntBASIC12.55□□□□□ -0.4
CXCL1P09341 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CXCL1P09341 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
CXCL1P09341 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
CXCL1P09341 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CXCL1P09341 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC12.55□□□□□ -0.4
CXCL1P09341 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC12.55□□□□□ -0.4
CXCL1P09341 LIN28AP1-201ENST00000429574 405 ntBASIC12.55□□□□□ -0.4
CXCL1P09341 SLC25A3P1-201ENST00000443844 931 ntBASIC12.55□□□□□ -0.4
CXCL1P09341 DANCR-204ENST00000444958 709 ntTSL 3 BASIC12.55□□□□□ -0.4
CXCL1P09341 AC092597.1-201ENST00000487352 616 ntBASIC12.55□□□□□ -0.4
CXCL1P09341 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CXCL1P09341 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC12.55□□□□□ -0.4
CXCL1P09341 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC12.55□□□□□ -0.4
CXCL1P09341 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC12.55□□□□□ -0.4
CXCL1P09341 FGF14-AS2-201ENST00000606448 1074 ntBASIC12.55□□□□□ -0.4
CXCL1P09341 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CXCL1P09341 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
CXCL1P09341 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC12.55□□□□□ -0.4
CXCL1P09341 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CXCL1P09341 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CXCL1P09341 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CXCL1P09341 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
CXCL1P09341 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CXCL1P09341 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC12.55□□□□□ -0.4
CXCL1P09341 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CXCL1P09341 C18orf15-201ENST00000623680 2534 ntBASIC12.55□□□□□ -0.4
CXCL1P09341 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
CXCL1P09341 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CXCL1P09341 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CXCL1P09341 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CXCL1P09341 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC12.55□□□□□ -0.4
CXCL1P09341 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
CXCL1P09341 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CXCL1P09341 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
CXCL1P09341 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CXCL1P09341 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CXCL1P09341 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CXCL1P09341 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CXCL1P09341 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC12.55□□□□□ -0.4
CXCL1P09341 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC12.55□□□□□ -0.4
CXCL1P09341 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
CXCL1P09341 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
CXCL1P09341 AC005562.1-201ENST00000583030 3219 ntBASIC12.54□□□□□ -0.4
CXCL1P09341 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CXCL1P09341 ABLIM2-213ENST00000514025 2974 ntTSL 2 BASIC12.54□□□□□ -0.4
CXCL1P09341 TCAF1P1-201ENST00000414990 2232 ntBASIC12.54□□□□□ -0.4
CXCL1P09341 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC12.54□□□□□ -0.4
CXCL1P09341 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CXCL1P09341 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
CXCL1P09341 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CXCL1P09341 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
CXCL1P09341 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC12.54□□□□□ -0.4
CXCL1P09341 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CXCL1P09341 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC12.54□□□□□ -0.4
CXCL1P09341 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
CXCL1P09341 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CXCL1P09341 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CXCL1P09341 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
CXCL1P09341 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CXCL1P09341 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC12.54□□□□□ -0.4
CXCL1P09341 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
CXCL1P09341 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
CXCL1P09341 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
CXCL1P09341 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
CXCL1P09341 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CXCL1P09341 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CXCL1P09341 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CXCL1P09341 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
CXCL1P09341 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC12.54□□□□□ -0.4
CXCL1P09341 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CXCL1P09341 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC12.54□□□□□ -0.4
CXCL1P09341 HOMER2P1-201ENST00000455653 964 ntBASIC12.54□□□□□ -0.4
CXCL1P09341 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC12.54□□□□□ -0.4
CXCL1P09341 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CXCL1P09341 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
CXCL1P09341 WDR6-223ENST00000627177 207 ntTSL 2 BASIC12.54□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms