Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
HLA-DOAP06340 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HLA-DOAP06340 CLK3P2-201ENST00000427566 1453 ntBASIC18.88■□□□□ 0.61
HLA-DOAP06340 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HLA-DOAP06340 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC18.88■□□□□ 0.61
HLA-DOAP06340 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HLA-DOAP06340 AC134407.2-201ENST00000625089 1978 ntBASIC18.88■□□□□ 0.61
HLA-DOAP06340 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HLA-DOAP06340 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HLA-DOAP06340 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HLA-DOAP06340 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HLA-DOAP06340 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
HLA-DOAP06340 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HLA-DOAP06340 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
HLA-DOAP06340 CA12-203ENST00000422263 2556 ntTSL 2 BASIC18.88■□□□□ 0.61
HLA-DOAP06340 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
HLA-DOAP06340 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HLA-DOAP06340 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
HLA-DOAP06340 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
HLA-DOAP06340 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
HLA-DOAP06340 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HLA-DOAP06340 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HLA-DOAP06340 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
HLA-DOAP06340 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HLA-DOAP06340 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HLA-DOAP06340 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
HLA-DOAP06340 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HLA-DOAP06340 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
HLA-DOAP06340 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
HLA-DOAP06340 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC18.87■□□□□ 0.61
HLA-DOAP06340 U91328.1-201ENST00000437528 223 ntBASIC18.87■□□□□ 0.61
HLA-DOAP06340 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC18.87■□□□□ 0.61
HLA-DOAP06340 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HLA-DOAP06340 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
HLA-DOAP06340 GPR53P-205ENST00000457298 1084 ntBASIC18.87■□□□□ 0.61
HLA-DOAP06340 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
HLA-DOAP06340 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HLA-DOAP06340 NEU3-203ENST00000529024 581 ntTSL 3 BASIC18.87■□□□□ 0.61
HLA-DOAP06340 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
HLA-DOAP06340 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC18.87■□□□□ 0.61
HLA-DOAP06340 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC18.87■□□□□ 0.61
HLA-DOAP06340 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HLA-DOAP06340 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC18.87■□□□□ 0.61
HLA-DOAP06340 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC18.87■□□□□ 0.61
HLA-DOAP06340 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC18.87■□□□□ 0.61
HLA-DOAP06340 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HLA-DOAP06340 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HLA-DOAP06340 AC036164.1-201ENST00000570544 333 ntBASIC18.87■□□□□ 0.61
HLA-DOAP06340 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
HLA-DOAP06340 AC132938.2-201ENST00000579188 680 ntBASIC18.87■□□□□ 0.61
HLA-DOAP06340 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
HLA-DOAP06340 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC18.87■□□□□ 0.61
HLA-DOAP06340 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HLA-DOAP06340 TMEM261P1-201ENST00000604899 340 ntBASIC18.87■□□□□ 0.61
HLA-DOAP06340 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC18.87■□□□□ 0.61
HLA-DOAP06340 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC18.87■□□□□ 0.61
HLA-DOAP06340 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
HLA-DOAP06340 AL591163.1-201ENST00000641757 987 ntBASIC18.87■□□□□ 0.61
HLA-DOAP06340 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HLA-DOAP06340 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
HLA-DOAP06340 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC18.87■□□□□ 0.61
HLA-DOAP06340 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HLA-DOAP06340 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HLA-DOAP06340 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC18.86■□□□□ 0.61
HLA-DOAP06340 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
HLA-DOAP06340 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HLA-DOAP06340 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
HLA-DOAP06340 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC18.86■□□□□ 0.61
HLA-DOAP06340 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HLA-DOAP06340 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HLA-DOAP06340 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HLA-DOAP06340 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC18.86■□□□□ 0.61
HLA-DOAP06340 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HLA-DOAP06340 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HLA-DOAP06340 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
HLA-DOAP06340 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC18.86■□□□□ 0.61
HLA-DOAP06340 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC18.86■□□□□ 0.61
HLA-DOAP06340 PHKG1P2-201ENST00000457537 863 ntBASIC18.86■□□□□ 0.61
HLA-DOAP06340 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC18.86■□□□□ 0.61
HLA-DOAP06340 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC18.86■□□□□ 0.61
HLA-DOAP06340 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC18.86■□□□□ 0.61
HLA-DOAP06340 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC18.86■□□□□ 0.61
HLA-DOAP06340 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HLA-DOAP06340 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC18.86■□□□□ 0.61
HLA-DOAP06340 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC18.86■□□□□ 0.61
HLA-DOAP06340 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC18.86■□□□□ 0.61
HLA-DOAP06340 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC18.86■□□□□ 0.61
HLA-DOAP06340 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC18.86■□□□□ 0.61
HLA-DOAP06340 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
HLA-DOAP06340 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
HLA-DOAP06340 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HLA-DOAP06340 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
HLA-DOAP06340 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HLA-DOAP06340 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC18.86■□□□□ 0.61
HLA-DOAP06340 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HLA-DOAP06340 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HLA-DOAP06340 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HLA-DOAP06340 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC18.86■□□□□ 0.61
HLA-DOAP06340 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HLA-DOAP06340 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms