Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TCRBV7S3A2A0A539 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TCRBV7S3A2A0A539 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC16.38■□□□□ 0.21
TCRBV7S3A2A0A539 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
TCRBV7S3A2A0A539 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TCRBV7S3A2A0A539 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC16.38■□□□□ 0.21
TCRBV7S3A2A0A539 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
TCRBV7S3A2A0A539 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TCRBV7S3A2A0A539 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TCRBV7S3A2A0A539 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TCRBV7S3A2A0A539 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC16.38■□□□□ 0.21
TCRBV7S3A2A0A539 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC16.38■□□□□ 0.21
TCRBV7S3A2A0A539 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
TCRBV7S3A2A0A539 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC16.38■□□□□ 0.21
TCRBV7S3A2A0A539 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC16.38■□□□□ 0.21
TCRBV7S3A2A0A539 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
TCRBV7S3A2A0A539 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC16.37■□□□□ 0.21
TCRBV7S3A2A0A539 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TCRBV7S3A2A0A539 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
TCRBV7S3A2A0A539 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TCRBV7S3A2A0A539 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TCRBV7S3A2A0A539 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TCRBV7S3A2A0A539 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TCRBV7S3A2A0A539 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
TCRBV7S3A2A0A539 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TCRBV7S3A2A0A539 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC16.37■□□□□ 0.21
TCRBV7S3A2A0A539 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TCRBV7S3A2A0A539 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TCRBV7S3A2A0A539 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC16.37■□□□□ 0.21
TCRBV7S3A2A0A539 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TCRBV7S3A2A0A539 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TCRBV7S3A2A0A539 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TCRBV7S3A2A0A539 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
TCRBV7S3A2A0A539 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC16.37■□□□□ 0.21
TCRBV7S3A2A0A539 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC16.37■□□□□ 0.21
TCRBV7S3A2A0A539 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC16.37■□□□□ 0.21
TCRBV7S3A2A0A539 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
TCRBV7S3A2A0A539 RARRES2P8-201ENST00000566335 367 ntBASIC16.37■□□□□ 0.21
TCRBV7S3A2A0A539 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TCRBV7S3A2A0A539 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
TCRBV7S3A2A0A539 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
TCRBV7S3A2A0A539 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
TCRBV7S3A2A0A539 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
TCRBV7S3A2A0A539 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC16.37■□□□□ 0.21
TCRBV7S3A2A0A539 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC16.37■□□□□ 0.21
TCRBV7S3A2A0A539 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC16.37■□□□□ 0.21
TCRBV7S3A2A0A539 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TCRBV7S3A2A0A539 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC16.37■□□□□ 0.21
TCRBV7S3A2A0A539 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC16.37■□□□□ 0.21
TCRBV7S3A2A0A539 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
TCRBV7S3A2A0A539 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC16.36■□□□□ 0.21
TCRBV7S3A2A0A539 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC16.36■□□□□ 0.21
TCRBV7S3A2A0A539 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
TCRBV7S3A2A0A539 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TCRBV7S3A2A0A539 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TCRBV7S3A2A0A539 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TCRBV7S3A2A0A539 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC16.36■□□□□ 0.21
TCRBV7S3A2A0A539 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC16.36■□□□□ 0.21
TCRBV7S3A2A0A539 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC16.36■□□□□ 0.21
TCRBV7S3A2A0A539 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC16.36■□□□□ 0.21
TCRBV7S3A2A0A539 AC087481.3-201ENST00000602886 1894 ntBASIC16.36■□□□□ 0.21
TCRBV7S3A2A0A539 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC16.36■□□□□ 0.21
TCRBV7S3A2A0A539 BNIP3P1-202ENST00000550043 1585 ntBASIC16.36■□□□□ 0.21
TCRBV7S3A2A0A539 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
TCRBV7S3A2A0A539 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TCRBV7S3A2A0A539 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC16.36■□□□□ 0.21
TCRBV7S3A2A0A539 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC16.36■□□□□ 0.21
TCRBV7S3A2A0A539 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC16.36■□□□□ 0.21
TCRBV7S3A2A0A539 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC16.36■□□□□ 0.21
TCRBV7S3A2A0A539 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
TCRBV7S3A2A0A539 INO80E-210ENST00000567705 880 ntTSL 3 BASIC16.36■□□□□ 0.21
TCRBV7S3A2A0A539 SPTSSB-204ENST00000617024 1292 ntBASIC16.36■□□□□ 0.21
TCRBV7S3A2A0A539 NME4-212ENST00000621774 904 ntTSL 3 BASIC16.36■□□□□ 0.21
TCRBV7S3A2A0A539 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TCRBV7S3A2A0A539 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC16.36■□□□□ 0.21
TCRBV7S3A2A0A539 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TCRBV7S3A2A0A539 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TCRBV7S3A2A0A539 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TCRBV7S3A2A0A539 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TCRBV7S3A2A0A539 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC16.36■□□□□ 0.21
TCRBV7S3A2A0A539 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TCRBV7S3A2A0A539 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC16.36■□□□□ 0.21
TCRBV7S3A2A0A539 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
TCRBV7S3A2A0A539 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TCRBV7S3A2A0A539 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
TCRBV7S3A2A0A539 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC16.35■□□□□ 0.21
TCRBV7S3A2A0A539 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TCRBV7S3A2A0A539 AC068418.2-201ENST00000577309 3703 ntBASIC16.35■□□□□ 0.21
TCRBV7S3A2A0A539 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
TCRBV7S3A2A0A539 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
TCRBV7S3A2A0A539 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC16.35■□□□□ 0.21
TCRBV7S3A2A0A539 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TCRBV7S3A2A0A539 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TCRBV7S3A2A0A539 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
TCRBV7S3A2A0A539 TKT-202ENST00000423516 2075 ntTSL 2 BASIC16.35■□□□□ 0.21
TCRBV7S3A2A0A539 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TCRBV7S3A2A0A539 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TCRBV7S3A2A0A539 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC16.35■□□□□ 0.21
TCRBV7S3A2A0A539 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
TCRBV7S3A2A0A539 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC16.35■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms