Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PPP4R4Q6NUP7 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PPP4R4Q6NUP7 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PPP4R4Q6NUP7 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC15.56■□□□□ 0.08
PPP4R4Q6NUP7 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PPP4R4Q6NUP7 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
PPP4R4Q6NUP7 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PPP4R4Q6NUP7 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PPP4R4Q6NUP7 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PPP4R4Q6NUP7 AL022342.1-201ENST00000400363 863 ntBASIC15.56■□□□□ 0.08
PPP4R4Q6NUP7 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC15.56■□□□□ 0.08
PPP4R4Q6NUP7 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC15.56■□□□□ 0.08
PPP4R4Q6NUP7 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC15.56■□□□□ 0.08
PPP4R4Q6NUP7 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PPP4R4Q6NUP7 LITAF-211ENST00000572255 516 ntTSL 4 BASIC15.56■□□□□ 0.08
PPP4R4Q6NUP7 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC15.56■□□□□ 0.08
PPP4R4Q6NUP7 AC006557.2-201ENST00000592985 1240 ntBASIC15.56■□□□□ 0.08
PPP4R4Q6NUP7 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC15.56■□□□□ 0.08
PPP4R4Q6NUP7 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
PPP4R4Q6NUP7 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PPP4R4Q6NUP7 ING5-213ENST00000636051 4199 ntTSL 5 BASIC15.56■□□□□ 0.08
PPP4R4Q6NUP7 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PPP4R4Q6NUP7 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PPP4R4Q6NUP7 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PPP4R4Q6NUP7 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC15.56■□□□□ 0.08
PPP4R4Q6NUP7 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC15.56■□□□□ 0.08
PPP4R4Q6NUP7 AC069224.1-201ENST00000566372 1715 ntBASIC15.56■□□□□ 0.08
PPP4R4Q6NUP7 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PPP4R4Q6NUP7 SSR4P1-203ENST00000599569 2260 ntBASIC15.56■□□□□ 0.08
PPP4R4Q6NUP7 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
PPP4R4Q6NUP7 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
PPP4R4Q6NUP7 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PPP4R4Q6NUP7 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
PPP4R4Q6NUP7 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PPP4R4Q6NUP7 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC15.56■□□□□ 0.08
PPP4R4Q6NUP7 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
PPP4R4Q6NUP7 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
PPP4R4Q6NUP7 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PPP4R4Q6NUP7 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PPP4R4Q6NUP7 AL671710.1-201ENST00000610245 2349 ntBASIC15.55■□□□□ 0.08
PPP4R4Q6NUP7 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PPP4R4Q6NUP7 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC15.55■□□□□ 0.08
PPP4R4Q6NUP7 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
PPP4R4Q6NUP7 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC15.55■□□□□ 0.08
PPP4R4Q6NUP7 AP002414.3-201ENST00000589352 1468 ntBASIC15.55■□□□□ 0.08
PPP4R4Q6NUP7 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
PPP4R4Q6NUP7 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC15.55■□□□□ 0.08
PPP4R4Q6NUP7 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PPP4R4Q6NUP7 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC15.55■□□□□ 0.08
PPP4R4Q6NUP7 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PPP4R4Q6NUP7 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
PPP4R4Q6NUP7 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PPP4R4Q6NUP7 PPIE-208ENST00000470213 927 ntTSL 3 BASIC15.55■□□□□ 0.08
PPP4R4Q6NUP7 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC15.55■□□□□ 0.08
PPP4R4Q6NUP7 AC105339.3-201ENST00000560043 636 ntBASIC15.55■□□□□ 0.08
PPP4R4Q6NUP7 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC15.55■□□□□ 0.08
PPP4R4Q6NUP7 WDR88-203ENST00000592765 651 ntTSL 5 BASIC15.55■□□□□ 0.08
PPP4R4Q6NUP7 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
PPP4R4Q6NUP7 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC15.55■□□□□ 0.08
PPP4R4Q6NUP7 AC107918.4-202ENST00000641623 219 ntBASIC15.55■□□□□ 0.08
PPP4R4Q6NUP7 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC15.55■□□□□ 0.08
PPP4R4Q6NUP7 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PPP4R4Q6NUP7 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PPP4R4Q6NUP7 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC15.55■□□□□ 0.08
PPP4R4Q6NUP7 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC15.55■□□□□ 0.08
PPP4R4Q6NUP7 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PPP4R4Q6NUP7 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PPP4R4Q6NUP7 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PPP4R4Q6NUP7 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PPP4R4Q6NUP7 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC15.55■□□□□ 0.08
PPP4R4Q6NUP7 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PPP4R4Q6NUP7 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
PPP4R4Q6NUP7 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
PPP4R4Q6NUP7 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC15.55■□□□□ 0.08
PPP4R4Q6NUP7 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC15.55■□□□□ 0.08
PPP4R4Q6NUP7 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PPP4R4Q6NUP7 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
PPP4R4Q6NUP7 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
PPP4R4Q6NUP7 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC15.54■□□□□ 0.08
PPP4R4Q6NUP7 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
PPP4R4Q6NUP7 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
PPP4R4Q6NUP7 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC15.54■□□□□ 0.08
PPP4R4Q6NUP7 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
PPP4R4Q6NUP7 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
PPP4R4Q6NUP7 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PPP4R4Q6NUP7 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
PPP4R4Q6NUP7 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
PPP4R4Q6NUP7 AP002414.2-201ENST00000591780 3365 ntBASIC15.54■□□□□ 0.08
PPP4R4Q6NUP7 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC15.54■□□□□ 0.08
PPP4R4Q6NUP7 AC243591.1-201ENST00000452967 1364 ntBASIC15.54■□□□□ 0.08
PPP4R4Q6NUP7 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC15.54■□□□□ 0.08
PPP4R4Q6NUP7 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
PPP4R4Q6NUP7 IL9RP2-201ENST00000423948 1312 ntBASIC15.54■□□□□ 0.08
PPP4R4Q6NUP7 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PPP4R4Q6NUP7 AP002414.1-201ENST00000391405 1147 ntBASIC15.54■□□□□ 0.08
PPP4R4Q6NUP7 MIR940-201ENST00000401276 94 ntBASIC15.54■□□□□ 0.08
PPP4R4Q6NUP7 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
PPP4R4Q6NUP7 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC15.54■□□□□ 0.08
PPP4R4Q6NUP7 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC15.54■□□□□ 0.08
PPP4R4Q6NUP7 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 89.3 ms