Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.13
SHMT2P34897 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC15.83■□□□□ 0.13
SHMT2P34897 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
SHMT2P34897 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC15.83■□□□□ 0.13
SHMT2P34897 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SHMT2P34897 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SHMT2P34897 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC15.83■□□□□ 0.12
SHMT2P34897 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
SHMT2P34897 PNMT-202ENST00000394246 821 ntTSL 2 BASIC15.83■□□□□ 0.12
SHMT2P34897 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
SHMT2P34897 AL645939.2-201ENST00000427340 991 ntBASIC15.83■□□□□ 0.12
SHMT2P34897 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC15.83■□□□□ 0.12
SHMT2P34897 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC15.83■□□□□ 0.12
SHMT2P34897 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC15.83■□□□□ 0.12
SHMT2P34897 AC069262.1-201ENST00000539058 672 ntBASIC15.83■□□□□ 0.12
SHMT2P34897 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC15.83■□□□□ 0.12
SHMT2P34897 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
SHMT2P34897 MIR6080-201ENST00000617359 66 ntBASIC15.83■□□□□ 0.12
SHMT2P34897 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SHMT2P34897 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SHMT2P34897 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SHMT2P34897 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
SHMT2P34897 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
SHMT2P34897 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SHMT2P34897 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SHMT2P34897 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC15.83■□□□□ 0.12
SHMT2P34897 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SHMT2P34897 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
SHMT2P34897 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
SHMT2P34897 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
SHMT2P34897 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SHMT2P34897 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
SHMT2P34897 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
SHMT2P34897 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
SHMT2P34897 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
SHMT2P34897 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SHMT2P34897 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC15.83■□□□□ 0.12
SHMT2P34897 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHMT2P34897 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHMT2P34897 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC15.82■□□□□ 0.12
SHMT2P34897 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHMT2P34897 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHMT2P34897 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC15.82■□□□□ 0.12
SHMT2P34897 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
SHMT2P34897 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC15.82■□□□□ 0.12
SHMT2P34897 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHMT2P34897 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHMT2P34897 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHMT2P34897 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHMT2P34897 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
SHMT2P34897 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHMT2P34897 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
SHMT2P34897 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHMT2P34897 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
SHMT2P34897 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
SHMT2P34897 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHMT2P34897 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SHMT2P34897 CD81-202ENST00000381036 880 ntTSL 3 BASIC15.82■□□□□ 0.12
SHMT2P34897 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC15.82■□□□□ 0.12
SHMT2P34897 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHMT2P34897 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC15.82■□□□□ 0.12
SHMT2P34897 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC15.82■□□□□ 0.12
SHMT2P34897 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC15.82■□□□□ 0.12
SHMT2P34897 FAM86GP-201ENST00000448322 971 ntBASIC15.82■□□□□ 0.12
SHMT2P34897 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC15.82■□□□□ 0.12
SHMT2P34897 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SHMT2P34897 AC067863.1-201ENST00000494933 530 ntBASIC15.82■□□□□ 0.12
SHMT2P34897 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC15.82■□□□□ 0.12
SHMT2P34897 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC15.82■□□□□ 0.12
SHMT2P34897 AC015911.4-201ENST00000588022 1070 ntBASIC15.82■□□□□ 0.12
SHMT2P34897 AL365330.1-201ENST00000607459 531 ntBASIC15.82■□□□□ 0.12
SHMT2P34897 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC15.82■□□□□ 0.12
SHMT2P34897 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
SHMT2P34897 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHMT2P34897 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SHMT2P34897 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC15.82■□□□□ 0.12
SHMT2P34897 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
SHMT2P34897 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
SHMT2P34897 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
SHMT2P34897 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SHMT2P34897 VILL-207ENST00000465644 1857 ntTSL 5 BASIC15.82■□□□□ 0.12
SHMT2P34897 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
SHMT2P34897 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC15.82■□□□□ 0.12
SHMT2P34897 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHMT2P34897 BLK-205ENST00000529894 2017 ntTSL 5 BASIC15.82■□□□□ 0.12
SHMT2P34897 RELA-227ENST00000615805 2236 ntTSL 5 BASIC15.82■□□□□ 0.12
SHMT2P34897 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHMT2P34897 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHMT2P34897 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
SHMT2P34897 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHMT2P34897 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHMT2P34897 SLC9A7P1-201ENST00000554295 3311 ntBASIC15.81■□□□□ 0.12
SHMT2P34897 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
SHMT2P34897 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHMT2P34897 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHMT2P34897 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHMT2P34897 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHMT2P34897 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHMT2P34897 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
SHMT2P34897 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms