Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM35Q9UPQ4 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM35Q9UPQ4 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM35Q9UPQ4 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
TRIM35Q9UPQ4 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM35Q9UPQ4 AC236430.1-201ENST00000402231 743 ntBASIC20.85■□□□□ 0.93
TRIM35Q9UPQ4 RASL12-203ENST00000434605 982 ntTSL 2 BASIC20.85■□□□□ 0.93
TRIM35Q9UPQ4 AC002472.2-201ENST00000442739 958 ntBASIC20.85■□□□□ 0.93
TRIM35Q9UPQ4 AL589987.1-201ENST00000453380 819 ntBASIC20.85■□□□□ 0.93
TRIM35Q9UPQ4 SDHAP3-202ENST00000515467 728 ntBASIC20.85■□□□□ 0.93
TRIM35Q9UPQ4 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC20.85■□□□□ 0.93
TRIM35Q9UPQ4 REEP4-207ENST00000523293 913 ntTSL 3 BASIC20.85■□□□□ 0.93
TRIM35Q9UPQ4 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC20.85■□□□□ 0.93
TRIM35Q9UPQ4 LINC01115-203ENST00000606068 577 ntBASIC20.85■□□□□ 0.93
TRIM35Q9UPQ4 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM35Q9UPQ4 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
TRIM35Q9UPQ4 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM35Q9UPQ4 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC20.85■□□□□ 0.93
TRIM35Q9UPQ4 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
TRIM35Q9UPQ4 AL607033.1-201ENST00000623900 1599 ntBASIC20.85■□□□□ 0.93
TRIM35Q9UPQ4 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM35Q9UPQ4 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM35Q9UPQ4 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
TRIM35Q9UPQ4 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM35Q9UPQ4 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM35Q9UPQ4 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM35Q9UPQ4 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM35Q9UPQ4 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC20.84■□□□□ 0.93
TRIM35Q9UPQ4 FLII-221ENST00000578558 2377 ntTSL 5 BASIC20.84■□□□□ 0.93
TRIM35Q9UPQ4 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC20.84■□□□□ 0.93
TRIM35Q9UPQ4 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC20.84■□□□□ 0.93
TRIM35Q9UPQ4 HNRNPA1P40-201ENST00000426371 1278 ntBASIC20.84■□□□□ 0.93
TRIM35Q9UPQ4 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC20.84■□□□□ 0.93
TRIM35Q9UPQ4 SPTLC1P1-201ENST00000447199 261 ntBASIC20.84■□□□□ 0.93
TRIM35Q9UPQ4 STOM-203ENST00000538954 1257 ntTSL 5 BASIC20.84■□□□□ 0.93
TRIM35Q9UPQ4 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC20.84■□□□□ 0.93
TRIM35Q9UPQ4 ARL16-202ENST00000570561 768 ntTSL 2 BASIC20.84■□□□□ 0.93
TRIM35Q9UPQ4 MIR4745-201ENST00000577608 62 ntBASIC20.84■□□□□ 0.93
TRIM35Q9UPQ4 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC20.84■□□□□ 0.93
TRIM35Q9UPQ4 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC20.84■□□□□ 0.93
TRIM35Q9UPQ4 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC20.84■□□□□ 0.93
TRIM35Q9UPQ4 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM35Q9UPQ4 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC20.84■□□□□ 0.93
TRIM35Q9UPQ4 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM35Q9UPQ4 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM35Q9UPQ4 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM35Q9UPQ4 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM35Q9UPQ4 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM35Q9UPQ4 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM35Q9UPQ4 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC20.84■□□□□ 0.93
TRIM35Q9UPQ4 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC20.83■□□□□ 0.93
TRIM35Q9UPQ4 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC20.83■□□□□ 0.93
TRIM35Q9UPQ4 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
TRIM35Q9UPQ4 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
TRIM35Q9UPQ4 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
TRIM35Q9UPQ4 BTBD7P1-201ENST00000447253 1453 ntBASIC20.83■□□□□ 0.93
TRIM35Q9UPQ4 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
TRIM35Q9UPQ4 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
TRIM35Q9UPQ4 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
TRIM35Q9UPQ4 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC20.83■□□□□ 0.93
TRIM35Q9UPQ4 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC20.83■□□□□ 0.93
TRIM35Q9UPQ4 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
TRIM35Q9UPQ4 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
TRIM35Q9UPQ4 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
TRIM35Q9UPQ4 KRT18P64-201ENST00000434946 1219 ntBASIC20.83■□□□□ 0.93
TRIM35Q9UPQ4 RPL13P2-201ENST00000440687 659 ntBASIC20.83■□□□□ 0.93
TRIM35Q9UPQ4 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
TRIM35Q9UPQ4 CAMTA1-205ENST00000467404 546 ntTSL 3 BASIC20.83■□□□□ 0.93
TRIM35Q9UPQ4 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
TRIM35Q9UPQ4 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC20.83■□□□□ 0.93
TRIM35Q9UPQ4 AC006213.4-201ENST00000616184 634 ntBASIC20.83■□□□□ 0.93
TRIM35Q9UPQ4 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
TRIM35Q9UPQ4 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC20.83■□□□□ 0.92
TRIM35Q9UPQ4 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.92
TRIM35Q9UPQ4 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
TRIM35Q9UPQ4 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC20.83■□□□□ 0.92
TRIM35Q9UPQ4 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC20.83■□□□□ 0.92
TRIM35Q9UPQ4 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC20.83■□□□□ 0.92
TRIM35Q9UPQ4 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
TRIM35Q9UPQ4 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM35Q9UPQ4 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM35Q9UPQ4 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC20.82■□□□□ 0.92
TRIM35Q9UPQ4 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC20.82■□□□□ 0.92
TRIM35Q9UPQ4 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM35Q9UPQ4 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM35Q9UPQ4 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM35Q9UPQ4 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC20.82■□□□□ 0.92
TRIM35Q9UPQ4 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC20.82■□□□□ 0.92
TRIM35Q9UPQ4 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
TRIM35Q9UPQ4 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC20.82■□□□□ 0.92
TRIM35Q9UPQ4 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC20.82■□□□□ 0.92
TRIM35Q9UPQ4 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC20.82■□□□□ 0.92
TRIM35Q9UPQ4 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC20.82■□□□□ 0.92
TRIM35Q9UPQ4 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC20.82■□□□□ 0.92
TRIM35Q9UPQ4 AC135586.1-201ENST00000539323 574 ntBASIC20.82■□□□□ 0.92
TRIM35Q9UPQ4 LINC02560-201ENST00000596379 459 ntBASIC20.82■□□□□ 0.92
TRIM35Q9UPQ4 RNA5-8SN1-201ENST00000610460 153 ntBASIC20.82■□□□□ 0.92
TRIM35Q9UPQ4 RNA5-8SN5-202ENST00000612463 153 ntBASIC20.82■□□□□ 0.92
TRIM35Q9UPQ4 RNA5-8SN4-201ENST00000613359 153 ntBASIC20.82■□□□□ 0.92
TRIM35Q9UPQ4 RNA5-8SN5-201ENST00000619471 153 ntBASIC20.82■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms