Protein–RNA interactions for Protein: Q9H611

PIF1, ATP-dependent DNA helicase PIF1, humanhuman

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PIF1Q9H611 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PIF1Q9H611 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC15.52■□□□□ 0.08
PIF1Q9H611 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PIF1Q9H611 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC15.52■□□□□ 0.08
PIF1Q9H611 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC15.52■□□□□ 0.08
PIF1Q9H611 MST1L-201ENST00000442552 2185 ntBASIC15.52■□□□□ 0.08
PIF1Q9H611 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
PIF1Q9H611 PAN3-AS1-201ENST00000563843 1351 ntBASIC15.52■□□□□ 0.08
PIF1Q9H611 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
PIF1Q9H611 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC15.52■□□□□ 0.08
PIF1Q9H611 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PIF1Q9H611 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC15.52■□□□□ 0.08
PIF1Q9H611 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC15.52■□□□□ 0.08
PIF1Q9H611 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC15.52■□□□□ 0.08
PIF1Q9H611 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC15.52■□□□□ 0.08
PIF1Q9H611 SLC9A3P2-201ENST00000447821 2021 ntBASIC15.52■□□□□ 0.08
PIF1Q9H611 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PIF1Q9H611 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PIF1Q9H611 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
PIF1Q9H611 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC15.52■□□□□ 0.08
PIF1Q9H611 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC15.52■□□□□ 0.08
PIF1Q9H611 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
PIF1Q9H611 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC15.52■□□□□ 0.08
PIF1Q9H611 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC15.52■□□□□ 0.08
PIF1Q9H611 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC15.52■□□□□ 0.08
PIF1Q9H611 BMF-207ENST00000559701 630 ntTSL 3 BASIC15.52■□□□□ 0.08
PIF1Q9H611 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC15.52■□□□□ 0.08
PIF1Q9H611 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC15.52■□□□□ 0.08
PIF1Q9H611 WT1-AS_2.1-201ENST00000613208 137 ntBASIC15.52■□□□□ 0.08
PIF1Q9H611 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
PIF1Q9H611 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.07
PIF1Q9H611 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
PIF1Q9H611 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
PIF1Q9H611 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
PIF1Q9H611 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC15.52■□□□□ 0.07
PIF1Q9H611 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
PIF1Q9H611 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
PIF1Q9H611 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC15.52■□□□□ 0.07
PIF1Q9H611 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.07
PIF1Q9H611 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
PIF1Q9H611 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC15.52■□□□□ 0.07
PIF1Q9H611 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC15.52■□□□□ 0.07
PIF1Q9H611 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC15.52■□□□□ 0.07
PIF1Q9H611 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
PIF1Q9H611 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
PIF1Q9H611 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC15.52■□□□□ 0.07
PIF1Q9H611 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
PIF1Q9H611 CICP13-201ENST00000422015 2789 ntBASIC15.52■□□□□ 0.07
PIF1Q9H611 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
PIF1Q9H611 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
PIF1Q9H611 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.07
PIF1Q9H611 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
PIF1Q9H611 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC15.51■□□□□ 0.07
PIF1Q9H611 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC15.51■□□□□ 0.07
PIF1Q9H611 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PIF1Q9H611 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PIF1Q9H611 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PIF1Q9H611 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PIF1Q9H611 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC15.51■□□□□ 0.07
PIF1Q9H611 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
PIF1Q9H611 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
PIF1Q9H611 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PIF1Q9H611 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
PIF1Q9H611 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
PIF1Q9H611 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PIF1Q9H611 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
PIF1Q9H611 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PIF1Q9H611 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC15.51■□□□□ 0.07
PIF1Q9H611 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC15.51■□□□□ 0.07
PIF1Q9H611 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PIF1Q9H611 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PIF1Q9H611 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC15.51■□□□□ 0.07
PIF1Q9H611 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC15.51■□□□□ 0.07
PIF1Q9H611 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PIF1Q9H611 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC15.51■□□□□ 0.07
PIF1Q9H611 AC020765.3-201ENST00000613051 740 ntBASIC15.51■□□□□ 0.07
PIF1Q9H611 BSG-214ENST00000614867 960 ntTSL 3 BASIC15.51■□□□□ 0.07
PIF1Q9H611 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
PIF1Q9H611 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PIF1Q9H611 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
PIF1Q9H611 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PIF1Q9H611 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC15.51■□□□□ 0.07
PIF1Q9H611 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
PIF1Q9H611 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PIF1Q9H611 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PIF1Q9H611 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC15.51■□□□□ 0.07
PIF1Q9H611 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
PIF1Q9H611 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
PIF1Q9H611 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
PIF1Q9H611 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PIF1Q9H611 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PIF1Q9H611 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC15.5■□□□□ 0.07
PIF1Q9H611 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PIF1Q9H611 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
PIF1Q9H611 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PIF1Q9H611 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
PIF1Q9H611 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC15.5■□□□□ 0.07
PIF1Q9H611 SSR4P1-203ENST00000599569 2260 ntBASIC15.5■□□□□ 0.07
PIF1Q9H611 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC15.5■□□□□ 0.07
PIF1Q9H611 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC15.5■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms