Protein–RNA interactions for Protein: Q9H422

HIPK3, Homeodomain-interacting protein kinase 3, humanhuman

Predictions only

Length 1,215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK3Q9H422 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.53■□□□□ 0.4
HIPK3Q9H422 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC17.53■□□□□ 0.4
HIPK3Q9H422 CEP83-AS1-201ENST00000623122 2482 ntBASIC17.53■□□□□ 0.4
HIPK3Q9H422 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
HIPK3Q9H422 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
HIPK3Q9H422 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC17.53■□□□□ 0.4
HIPK3Q9H422 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HIPK3Q9H422 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC17.53■□□□□ 0.4
HIPK3Q9H422 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC17.53■□□□□ 0.4
HIPK3Q9H422 AC007551.1-201ENST00000457394 519 ntBASIC17.53■□□□□ 0.4
HIPK3Q9H422 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC17.53■□□□□ 0.4
HIPK3Q9H422 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC17.53■□□□□ 0.4
HIPK3Q9H422 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC17.53■□□□□ 0.4
HIPK3Q9H422 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
HIPK3Q9H422 AC084018.2-201ENST00000613093 2607 ntBASIC17.53■□□□□ 0.4
HIPK3Q9H422 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC17.53■□□□□ 0.4
HIPK3Q9H422 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HIPK3Q9H422 INTS4P2-202ENST00000614726 2019 ntBASIC17.53■□□□□ 0.4
HIPK3Q9H422 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
HIPK3Q9H422 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC17.53■□□□□ 0.4
HIPK3Q9H422 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HIPK3Q9H422 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC17.53■□□□□ 0.4
HIPK3Q9H422 AL691432.1-201ENST00000596308 1422 ntBASIC17.53■□□□□ 0.4
HIPK3Q9H422 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HIPK3Q9H422 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
HIPK3Q9H422 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HIPK3Q9H422 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
HIPK3Q9H422 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HIPK3Q9H422 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC17.53■□□□□ 0.4
HIPK3Q9H422 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC17.52■□□□□ 0.4
HIPK3Q9H422 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC17.52■□□□□ 0.4
HIPK3Q9H422 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
HIPK3Q9H422 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
HIPK3Q9H422 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HIPK3Q9H422 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC17.52■□□□□ 0.4
HIPK3Q9H422 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC17.52■□□□□ 0.4
HIPK3Q9H422 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC17.52■□□□□ 0.4
HIPK3Q9H422 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
HIPK3Q9H422 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HIPK3Q9H422 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC17.52■□□□□ 0.4
HIPK3Q9H422 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HIPK3Q9H422 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
HIPK3Q9H422 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HIPK3Q9H422 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HIPK3Q9H422 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
HIPK3Q9H422 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HIPK3Q9H422 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HIPK3Q9H422 GRN-214ENST00000589265 1632 ntTSL 5 BASIC17.52■□□□□ 0.4
HIPK3Q9H422 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HIPK3Q9H422 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
HIPK3Q9H422 YBX1P6-201ENST00000442962 1002 ntBASIC17.52■□□□□ 0.4
HIPK3Q9H422 EEF1DP4-201ENST00000446006 880 ntBASIC17.52■□□□□ 0.4
HIPK3Q9H422 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HIPK3Q9H422 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC17.52■□□□□ 0.4
HIPK3Q9H422 RPL13AP25-201ENST00000484130 612 ntBASIC17.52■□□□□ 0.4
HIPK3Q9H422 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HIPK3Q9H422 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC17.52■□□□□ 0.4
HIPK3Q9H422 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC17.52■□□□□ 0.4
HIPK3Q9H422 IGHV3OR16-16-201ENST00000563644 343 ntBASIC17.52■□□□□ 0.4
HIPK3Q9H422 AC124283.3-201ENST00000570869 594 ntBASIC17.52■□□□□ 0.4
HIPK3Q9H422 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.4
HIPK3Q9H422 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC17.52■□□□□ 0.4
HIPK3Q9H422 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC17.52■□□□□ 0.4
HIPK3Q9H422 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC17.52■□□□□ 0.4
HIPK3Q9H422 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC17.52■□□□□ 0.4
HIPK3Q9H422 KRT8P37-201ENST00000451609 1420 ntBASIC17.52■□□□□ 0.4
HIPK3Q9H422 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
HIPK3Q9H422 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
HIPK3Q9H422 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
HIPK3Q9H422 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
HIPK3Q9H422 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
HIPK3Q9H422 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.39
HIPK3Q9H422 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC17.52■□□□□ 0.39
HIPK3Q9H422 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC17.52■□□□□ 0.39
HIPK3Q9H422 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC17.52■□□□□ 0.39
HIPK3Q9H422 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC17.51■□□□□ 0.39
HIPK3Q9H422 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
HIPK3Q9H422 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
HIPK3Q9H422 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
HIPK3Q9H422 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
HIPK3Q9H422 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
HIPK3Q9H422 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HIPK3Q9H422 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
HIPK3Q9H422 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HIPK3Q9H422 AC074338.1-201ENST00000416825 156 ntBASIC17.51■□□□□ 0.39
HIPK3Q9H422 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HIPK3Q9H422 TPI1-206ENST00000488464 791 ntTSL 5 BASIC17.51■□□□□ 0.39
HIPK3Q9H422 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC17.51■□□□□ 0.39
HIPK3Q9H422 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC17.51■□□□□ 0.39
HIPK3Q9H422 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC17.51■□□□□ 0.39
HIPK3Q9H422 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC17.51■□□□□ 0.39
HIPK3Q9H422 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC17.51■□□□□ 0.39
HIPK3Q9H422 AC010328.2-201ENST00000597698 1111 ntBASIC17.51■□□□□ 0.39
HIPK3Q9H422 AC243960.2-201ENST00000600996 747 ntBASIC17.51■□□□□ 0.39
HIPK3Q9H422 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
HIPK3Q9H422 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC17.51■□□□□ 0.39
HIPK3Q9H422 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
HIPK3Q9H422 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
HIPK3Q9H422 AL139384.1-201ENST00000612143 3047 ntBASIC17.51■□□□□ 0.39
HIPK3Q9H422 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC17.51■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms