Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM56Q9BRZ2 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM56Q9BRZ2 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM56Q9BRZ2 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM56Q9BRZ2 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM56Q9BRZ2 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM56Q9BRZ2 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM56Q9BRZ2 AC092384.3-202ENST00000564646 2873 ntBASIC16.55■□□□□ 0.24
TRIM56Q9BRZ2 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM56Q9BRZ2 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM56Q9BRZ2 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC16.55■□□□□ 0.24
TRIM56Q9BRZ2 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
TRIM56Q9BRZ2 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM56Q9BRZ2 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC16.54■□□□□ 0.24
TRIM56Q9BRZ2 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM56Q9BRZ2 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM56Q9BRZ2 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC16.54■□□□□ 0.24
TRIM56Q9BRZ2 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
TRIM56Q9BRZ2 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM56Q9BRZ2 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM56Q9BRZ2 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM56Q9BRZ2 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM56Q9BRZ2 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM56Q9BRZ2 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM56Q9BRZ2 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC16.54■□□□□ 0.24
TRIM56Q9BRZ2 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM56Q9BRZ2 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM56Q9BRZ2 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM56Q9BRZ2 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM56Q9BRZ2 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC16.54■□□□□ 0.24
TRIM56Q9BRZ2 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC16.54■□□□□ 0.24
TRIM56Q9BRZ2 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM56Q9BRZ2 CRYGEP-201ENST00000412192 528 ntBASIC16.54■□□□□ 0.24
TRIM56Q9BRZ2 KRT18P2-201ENST00000447938 1258 ntBASIC16.54■□□□□ 0.24
TRIM56Q9BRZ2 AC079776.4-201ENST00000511039 504 ntBASIC16.54■□□□□ 0.24
TRIM56Q9BRZ2 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC16.54■□□□□ 0.24
TRIM56Q9BRZ2 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC16.54■□□□□ 0.24
TRIM56Q9BRZ2 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC16.54■□□□□ 0.24
TRIM56Q9BRZ2 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC16.54■□□□□ 0.24
TRIM56Q9BRZ2 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC16.54■□□□□ 0.24
TRIM56Q9BRZ2 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM56Q9BRZ2 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC16.54■□□□□ 0.24
TRIM56Q9BRZ2 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC16.54■□□□□ 0.24
TRIM56Q9BRZ2 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM56Q9BRZ2 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC16.54■□□□□ 0.24
TRIM56Q9BRZ2 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM56Q9BRZ2 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM56Q9BRZ2 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM56Q9BRZ2 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM56Q9BRZ2 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM56Q9BRZ2 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
TRIM56Q9BRZ2 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC16.54■□□□□ 0.24
TRIM56Q9BRZ2 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC16.54■□□□□ 0.24
TRIM56Q9BRZ2 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC16.53■□□□□ 0.24
TRIM56Q9BRZ2 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM56Q9BRZ2 FES-204ENST00000414248 2327 ntTSL 2 BASIC16.53■□□□□ 0.24
TRIM56Q9BRZ2 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM56Q9BRZ2 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
TRIM56Q9BRZ2 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
TRIM56Q9BRZ2 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM56Q9BRZ2 AC092919.2-201ENST00000623631 1645 ntBASIC16.53■□□□□ 0.24
TRIM56Q9BRZ2 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM56Q9BRZ2 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC16.53■□□□□ 0.24
TRIM56Q9BRZ2 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
TRIM56Q9BRZ2 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM56Q9BRZ2 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM56Q9BRZ2 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM56Q9BRZ2 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM56Q9BRZ2 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC16.53■□□□□ 0.24
TRIM56Q9BRZ2 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC16.53■□□□□ 0.24
TRIM56Q9BRZ2 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC16.53■□□□□ 0.24
TRIM56Q9BRZ2 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC16.53■□□□□ 0.24
TRIM56Q9BRZ2 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM56Q9BRZ2 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM56Q9BRZ2 AL671883.3-201ENST00000603274 991 ntBASIC16.53■□□□□ 0.24
TRIM56Q9BRZ2 AC120114.3-201ENST00000611923 658 ntBASIC16.53■□□□□ 0.24
TRIM56Q9BRZ2 AL645728.2-201ENST00000641974 660 ntBASIC16.53■□□□□ 0.24
TRIM56Q9BRZ2 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC16.53■□□□□ 0.24
TRIM56Q9BRZ2 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
TRIM56Q9BRZ2 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
TRIM56Q9BRZ2 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM56Q9BRZ2 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC16.53■□□□□ 0.24
TRIM56Q9BRZ2 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM56Q9BRZ2 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM56Q9BRZ2 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM56Q9BRZ2 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC16.53■□□□□ 0.24
TRIM56Q9BRZ2 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC16.53■□□□□ 0.24
TRIM56Q9BRZ2 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM56Q9BRZ2 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM56Q9BRZ2 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM56Q9BRZ2 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC16.52■□□□□ 0.24
TRIM56Q9BRZ2 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
TRIM56Q9BRZ2 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC16.52■□□□□ 0.24
TRIM56Q9BRZ2 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRIM56Q9BRZ2 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRIM56Q9BRZ2 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
TRIM56Q9BRZ2 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRIM56Q9BRZ2 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC16.52■□□□□ 0.24
TRIM56Q9BRZ2 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC16.52■□□□□ 0.24
TRIM56Q9BRZ2 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms