Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC65Q8IXS2 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC65Q8IXS2 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC17.94■□□□□ 0.46
CCDC65Q8IXS2 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC17.94■□□□□ 0.46
CCDC65Q8IXS2 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC17.94■□□□□ 0.46
CCDC65Q8IXS2 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC65Q8IXS2 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC65Q8IXS2 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC17.94■□□□□ 0.46
CCDC65Q8IXS2 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC65Q8IXS2 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC65Q8IXS2 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC65Q8IXS2 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC65Q8IXS2 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
CCDC65Q8IXS2 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC65Q8IXS2 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC65Q8IXS2 AC211486.1-202ENST00000416371 468 ntBASIC17.94■□□□□ 0.46
CCDC65Q8IXS2 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC65Q8IXS2 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC17.94■□□□□ 0.46
CCDC65Q8IXS2 AC211476.1-201ENST00000503899 468 ntBASIC17.94■□□□□ 0.46
CCDC65Q8IXS2 DHDH-204ENST00000523250 634 ntTSL 5 BASIC17.94■□□□□ 0.46
CCDC65Q8IXS2 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC17.94■□□□□ 0.46
CCDC65Q8IXS2 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC17.94■□□□□ 0.46
CCDC65Q8IXS2 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC65Q8IXS2 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC65Q8IXS2 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC17.94■□□□□ 0.46
CCDC65Q8IXS2 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC65Q8IXS2 PKD1P5-201ENST00000532415 10291 ntBASIC17.94■□□□□ 0.46
CCDC65Q8IXS2 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC65Q8IXS2 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC65Q8IXS2 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC17.94■□□□□ 0.46
CCDC65Q8IXS2 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC65Q8IXS2 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC65Q8IXS2 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC65Q8IXS2 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC65Q8IXS2 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC65Q8IXS2 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC17.93■□□□□ 0.46
CCDC65Q8IXS2 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC17.93■□□□□ 0.46
CCDC65Q8IXS2 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC17.93■□□□□ 0.46
CCDC65Q8IXS2 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC65Q8IXS2 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC65Q8IXS2 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC65Q8IXS2 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC65Q8IXS2 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC17.93■□□□□ 0.46
CCDC65Q8IXS2 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC17.93■□□□□ 0.46
CCDC65Q8IXS2 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC65Q8IXS2 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC17.93■□□□□ 0.46
CCDC65Q8IXS2 AP3S2-216ENST00000617003 1561 ntBASIC17.93■□□□□ 0.46
CCDC65Q8IXS2 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC65Q8IXS2 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC17.93■□□□□ 0.46
CCDC65Q8IXS2 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC17.93■□□□□ 0.46
CCDC65Q8IXS2 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC17.93■□□□□ 0.46
CCDC65Q8IXS2 KRT18P32-201ENST00000424695 1287 ntBASIC17.93■□□□□ 0.46
CCDC65Q8IXS2 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC65Q8IXS2 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC17.93■□□□□ 0.46
CCDC65Q8IXS2 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
CCDC65Q8IXS2 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC17.93■□□□□ 0.46
CCDC65Q8IXS2 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC17.93■□□□□ 0.46
CCDC65Q8IXS2 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC17.93■□□□□ 0.46
CCDC65Q8IXS2 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC65Q8IXS2 WDR88-203ENST00000592765 651 ntTSL 5 BASIC17.93■□□□□ 0.46
CCDC65Q8IXS2 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC17.93■□□□□ 0.46
CCDC65Q8IXS2 AC004835.2-201ENST00000603762 682 ntBASIC17.93■□□□□ 0.46
CCDC65Q8IXS2 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC17.93■□□□□ 0.46
CCDC65Q8IXS2 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC17.93■□□□□ 0.46
CCDC65Q8IXS2 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC65Q8IXS2 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC17.93■□□□□ 0.46
CCDC65Q8IXS2 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
CCDC65Q8IXS2 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC65Q8IXS2 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC65Q8IXS2 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC65Q8IXS2 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC65Q8IXS2 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC65Q8IXS2 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC65Q8IXS2 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC65Q8IXS2 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC65Q8IXS2 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC65Q8IXS2 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC65Q8IXS2 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC17.92■□□□□ 0.46
CCDC65Q8IXS2 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC65Q8IXS2 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC65Q8IXS2 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC17.92■□□□□ 0.46
CCDC65Q8IXS2 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC17.92■□□□□ 0.46
CCDC65Q8IXS2 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
CCDC65Q8IXS2 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC65Q8IXS2 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC65Q8IXS2 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
CCDC65Q8IXS2 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC65Q8IXS2 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC65Q8IXS2 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC65Q8IXS2 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC65Q8IXS2 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC65Q8IXS2 AL627223.1-201ENST00000416693 442 ntBASIC17.92■□□□□ 0.46
CCDC65Q8IXS2 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC65Q8IXS2 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC65Q8IXS2 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC17.92■□□□□ 0.46
CCDC65Q8IXS2 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC17.92■□□□□ 0.46
CCDC65Q8IXS2 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC17.92■□□□□ 0.46
CCDC65Q8IXS2 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC17.92■□□□□ 0.46
CCDC65Q8IXS2 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC17.92■□□□□ 0.46
CCDC65Q8IXS2 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 61.3 ms