Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ZNF549Q6P9A3 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
ZNF549Q6P9A3 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ZNF549Q6P9A3 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC16.04■□□□□ 0.16
ZNF549Q6P9A3 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
ZNF549Q6P9A3 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC16.04■□□□□ 0.16
ZNF549Q6P9A3 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ZNF549Q6P9A3 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
ZNF549Q6P9A3 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
ZNF549Q6P9A3 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
ZNF549Q6P9A3 WARS-232ENST00000556645 2508 ntTSL 5 BASIC16.04■□□□□ 0.16
ZNF549Q6P9A3 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
ZNF549Q6P9A3 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC16.04■□□□□ 0.16
ZNF549Q6P9A3 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
ZNF549Q6P9A3 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
ZNF549Q6P9A3 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ZNF549Q6P9A3 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC16.04■□□□□ 0.16
ZNF549Q6P9A3 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC16.04■□□□□ 0.16
ZNF549Q6P9A3 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC16.04■□□□□ 0.16
ZNF549Q6P9A3 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ZNF549Q6P9A3 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC16.04■□□□□ 0.16
ZNF549Q6P9A3 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC16.04■□□□□ 0.16
ZNF549Q6P9A3 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC16.04■□□□□ 0.16
ZNF549Q6P9A3 AC079140.1-201ENST00000508039 487 ntBASIC16.04■□□□□ 0.16
ZNF549Q6P9A3 FAM86C2P-203ENST00000528684 1004 ntBASIC16.04■□□□□ 0.16
ZNF549Q6P9A3 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC16.04■□□□□ 0.16
ZNF549Q6P9A3 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC16.04■□□□□ 0.16
ZNF549Q6P9A3 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC16.04■□□□□ 0.16
ZNF549Q6P9A3 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC16.04■□□□□ 0.16
ZNF549Q6P9A3 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC16.04■□□□□ 0.16
ZNF549Q6P9A3 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC16.04■□□□□ 0.16
ZNF549Q6P9A3 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC16.04■□□□□ 0.16
ZNF549Q6P9A3 AC026120.1-201ENST00000611536 926 ntBASIC16.04■□□□□ 0.16
ZNF549Q6P9A3 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
ZNF549Q6P9A3 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
ZNF549Q6P9A3 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
ZNF549Q6P9A3 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ZNF549Q6P9A3 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
ZNF549Q6P9A3 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ZNF549Q6P9A3 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC16.04■□□□□ 0.16
ZNF549Q6P9A3 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC16.04■□□□□ 0.16
ZNF549Q6P9A3 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ZNF549Q6P9A3 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
ZNF549Q6P9A3 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
ZNF549Q6P9A3 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
ZNF549Q6P9A3 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
ZNF549Q6P9A3 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ZNF549Q6P9A3 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
ZNF549Q6P9A3 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
ZNF549Q6P9A3 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC16.03■□□□□ 0.16
ZNF549Q6P9A3 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
ZNF549Q6P9A3 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ZNF549Q6P9A3 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC16.03■□□□□ 0.16
ZNF549Q6P9A3 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
ZNF549Q6P9A3 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
ZNF549Q6P9A3 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
ZNF549Q6P9A3 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC16.03■□□□□ 0.16
ZNF549Q6P9A3 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ZNF549Q6P9A3 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC16.03■□□□□ 0.16
ZNF549Q6P9A3 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC16.03■□□□□ 0.16
ZNF549Q6P9A3 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC16.03■□□□□ 0.16
ZNF549Q6P9A3 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC16.03■□□□□ 0.16
ZNF549Q6P9A3 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
ZNF549Q6P9A3 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ZNF549Q6P9A3 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ZNF549Q6P9A3 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC16.03■□□□□ 0.16
ZNF549Q6P9A3 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ZNF549Q6P9A3 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ZNF549Q6P9A3 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ZNF549Q6P9A3 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ZNF549Q6P9A3 MIR346-201ENST00000362234 95 ntBASIC16.03■□□□□ 0.16
ZNF549Q6P9A3 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ZNF549Q6P9A3 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ZNF549Q6P9A3 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC16.03■□□□□ 0.16
ZNF549Q6P9A3 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC16.03■□□□□ 0.16
ZNF549Q6P9A3 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC16.03■□□□□ 0.16
ZNF549Q6P9A3 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
ZNF549Q6P9A3 HTR5BP-201ENST00000430851 1154 ntBASIC16.03■□□□□ 0.16
ZNF549Q6P9A3 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC16.03■□□□□ 0.16
ZNF549Q6P9A3 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC16.03■□□□□ 0.16
ZNF549Q6P9A3 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.16
ZNF549Q6P9A3 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC16.03■□□□□ 0.16
ZNF549Q6P9A3 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC16.03■□□□□ 0.16
ZNF549Q6P9A3 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC16.03■□□□□ 0.16
ZNF549Q6P9A3 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC16.03■□□□□ 0.16
ZNF549Q6P9A3 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
ZNF549Q6P9A3 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
ZNF549Q6P9A3 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
ZNF549Q6P9A3 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
ZNF549Q6P9A3 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC16.03■□□□□ 0.16
ZNF549Q6P9A3 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
ZNF549Q6P9A3 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
ZNF549Q6P9A3 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC16.03■□□□□ 0.16
ZNF549Q6P9A3 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC16.03■□□□□ 0.16
ZNF549Q6P9A3 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
ZNF549Q6P9A3 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC16.02■□□□□ 0.16
ZNF549Q6P9A3 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
ZNF549Q6P9A3 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC16.02■□□□□ 0.16
ZNF549Q6P9A3 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC16.02■□□□□ 0.16
ZNF549Q6P9A3 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC16.02■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms