Protein–RNA interactions for Protein: Q6P499

NIPAL3, NIPA-like protein 3, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3Q6P499 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NIPAL3Q6P499 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
NIPAL3Q6P499 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
NIPAL3Q6P499 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC14.75□□□□□ -0.05
NIPAL3Q6P499 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC14.75□□□□□ -0.05
NIPAL3Q6P499 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
NIPAL3Q6P499 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NIPAL3Q6P499 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
NIPAL3Q6P499 NEK7-201ENST00000367383 586 ntTSL 2 BASIC14.75□□□□□ -0.05
NIPAL3Q6P499 AC002056.1-201ENST00000395613 760 ntBASIC14.75□□□□□ -0.05
NIPAL3Q6P499 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC14.75□□□□□ -0.05
NIPAL3Q6P499 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC14.75□□□□□ -0.05
NIPAL3Q6P499 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC14.75□□□□□ -0.05
NIPAL3Q6P499 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
NIPAL3Q6P499 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC14.75□□□□□ -0.05
NIPAL3Q6P499 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
NIPAL3Q6P499 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC14.75□□□□□ -0.05
NIPAL3Q6P499 AC112191.1-201ENST00000523689 701 ntBASIC14.75□□□□□ -0.05
NIPAL3Q6P499 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC14.75□□□□□ -0.05
NIPAL3Q6P499 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC14.75□□□□□ -0.05
NIPAL3Q6P499 AP002472.1-201ENST00000577490 586 ntBASIC14.75□□□□□ -0.05
NIPAL3Q6P499 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC14.75□□□□□ -0.05
NIPAL3Q6P499 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC14.75□□□□□ -0.05
NIPAL3Q6P499 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC14.75□□□□□ -0.05
NIPAL3Q6P499 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NIPAL3Q6P499 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
NIPAL3Q6P499 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
NIPAL3Q6P499 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
NIPAL3Q6P499 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC14.75□□□□□ -0.05
NIPAL3Q6P499 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
NIPAL3Q6P499 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
NIPAL3Q6P499 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
NIPAL3Q6P499 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NIPAL3Q6P499 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
NIPAL3Q6P499 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC14.75□□□□□ -0.05
NIPAL3Q6P499 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NIPAL3Q6P499 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NIPAL3Q6P499 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NIPAL3Q6P499 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC14.75□□□□□ -0.05
NIPAL3Q6P499 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
NIPAL3Q6P499 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC14.74□□□□□ -0.05
NIPAL3Q6P499 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC14.74□□□□□ -0.05
NIPAL3Q6P499 AC013268.4-201ENST00000637413 2228 ntBASIC14.74□□□□□ -0.05
NIPAL3Q6P499 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC14.74□□□□□ -0.05
NIPAL3Q6P499 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC14.74□□□□□ -0.05
NIPAL3Q6P499 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
NIPAL3Q6P499 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC14.74□□□□□ -0.05
NIPAL3Q6P499 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
NIPAL3Q6P499 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
NIPAL3Q6P499 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
NIPAL3Q6P499 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
NIPAL3Q6P499 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC14.74□□□□□ -0.05
NIPAL3Q6P499 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
NIPAL3Q6P499 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
NIPAL3Q6P499 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
NIPAL3Q6P499 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
NIPAL3Q6P499 DPM2-202ENST00000373110 738 ntTSL 2 BASIC14.74□□□□□ -0.05
NIPAL3Q6P499 PMP22-202ENST00000395936 816 ntTSL 3 BASIC14.74□□□□□ -0.05
NIPAL3Q6P499 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
NIPAL3Q6P499 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC14.74□□□□□ -0.05
NIPAL3Q6P499 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC14.74□□□□□ -0.05
NIPAL3Q6P499 AC109635.5-201ENST00000533593 962 ntBASIC14.74□□□□□ -0.05
NIPAL3Q6P499 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC14.74□□□□□ -0.05
NIPAL3Q6P499 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC14.74□□□□□ -0.05
NIPAL3Q6P499 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
NIPAL3Q6P499 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
NIPAL3Q6P499 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC14.74□□□□□ -0.05
NIPAL3Q6P499 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC14.74□□□□□ -0.05
NIPAL3Q6P499 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
NIPAL3Q6P499 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
NIPAL3Q6P499 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
NIPAL3Q6P499 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
NIPAL3Q6P499 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC14.74□□□□□ -0.05
NIPAL3Q6P499 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC14.74□□□□□ -0.05
NIPAL3Q6P499 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC14.74□□□□□ -0.05
NIPAL3Q6P499 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC14.74□□□□□ -0.05
NIPAL3Q6P499 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
NIPAL3Q6P499 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC14.74□□□□□ -0.05
NIPAL3Q6P499 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
NIPAL3Q6P499 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
NIPAL3Q6P499 AC016027.1-202ENST00000607927 1699 ntBASIC14.74□□□□□ -0.05
NIPAL3Q6P499 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC14.74□□□□□ -0.05
NIPAL3Q6P499 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
NIPAL3Q6P499 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
NIPAL3Q6P499 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC14.74□□□□□ -0.05
NIPAL3Q6P499 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
NIPAL3Q6P499 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
NIPAL3Q6P499 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
NIPAL3Q6P499 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
NIPAL3Q6P499 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
NIPAL3Q6P499 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
NIPAL3Q6P499 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
NIPAL3Q6P499 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
NIPAL3Q6P499 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
NIPAL3Q6P499 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
NIPAL3Q6P499 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
NIPAL3Q6P499 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
NIPAL3Q6P499 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
NIPAL3Q6P499 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
NIPAL3Q6P499 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 163.4 ms