Protein–RNA interactions for Protein: P16234

PDGFRA, Platelet-derived growth factor receptor alpha, humanhuman

Predictions only

Length 1,089 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRAP16234 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PDGFRAP16234 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PDGFRAP16234 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PDGFRAP16234 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PDGFRAP16234 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC16.97■□□□□ 0.31
PDGFRAP16234 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
PDGFRAP16234 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
PDGFRAP16234 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PDGFRAP16234 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC16.97■□□□□ 0.31
PDGFRAP16234 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PDGFRAP16234 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC16.97■□□□□ 0.31
PDGFRAP16234 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC16.97■□□□□ 0.31
PDGFRAP16234 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC16.97■□□□□ 0.31
PDGFRAP16234 FAM58DP-201ENST00000428076 619 ntBASIC16.97■□□□□ 0.31
PDGFRAP16234 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PDGFRAP16234 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PDGFRAP16234 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC16.97■□□□□ 0.31
PDGFRAP16234 DAD1-205ENST00000543337 501 ntTSL 3 BASIC16.97■□□□□ 0.31
PDGFRAP16234 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC16.97■□□□□ 0.31
PDGFRAP16234 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC16.97■□□□□ 0.31
PDGFRAP16234 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC16.97■□□□□ 0.31
PDGFRAP16234 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC16.97■□□□□ 0.31
PDGFRAP16234 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PDGFRAP16234 AC008677.1-201ENST00000519230 1561 ntBASIC16.97■□□□□ 0.31
PDGFRAP16234 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC16.97■□□□□ 0.31
PDGFRAP16234 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
PDGFRAP16234 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
PDGFRAP16234 AC022188.1-201ENST00000620960 1664 ntBASIC16.97■□□□□ 0.31
PDGFRAP16234 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PDGFRAP16234 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
PDGFRAP16234 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC16.97■□□□□ 0.31
PDGFRAP16234 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PDGFRAP16234 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
PDGFRAP16234 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
PDGFRAP16234 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PDGFRAP16234 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
PDGFRAP16234 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
PDGFRAP16234 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PDGFRAP16234 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
PDGFRAP16234 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
PDGFRAP16234 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
PDGFRAP16234 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
PDGFRAP16234 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC16.96■□□□□ 0.31
PDGFRAP16234 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PDGFRAP16234 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PDGFRAP16234 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PDGFRAP16234 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
PDGFRAP16234 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
PDGFRAP16234 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PDGFRAP16234 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC16.96■□□□□ 0.31
PDGFRAP16234 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PDGFRAP16234 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC16.96■□□□□ 0.31
PDGFRAP16234 HLA-H-201ENST00000383620 1096 ntBASIC16.96■□□□□ 0.31
PDGFRAP16234 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC16.96■□□□□ 0.31
PDGFRAP16234 PON3-203ENST00000427422 894 ntTSL 3 BASIC16.96■□□□□ 0.31
PDGFRAP16234 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC16.96■□□□□ 0.31
PDGFRAP16234 AC004449.1-201ENST00000564240 433 ntBASIC16.96■□□□□ 0.31
PDGFRAP16234 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC16.96■□□□□ 0.31
PDGFRAP16234 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC16.96■□□□□ 0.31
PDGFRAP16234 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC16.96■□□□□ 0.31
PDGFRAP16234 AC093028.1-201ENST00000622998 982 ntBASIC16.96■□□□□ 0.31
PDGFRAP16234 AC009093.7-201ENST00000623853 1223 ntBASIC16.96■□□□□ 0.31
PDGFRAP16234 AP3S2-216ENST00000617003 1561 ntBASIC16.96■□□□□ 0.31
PDGFRAP16234 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
PDGFRAP16234 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
PDGFRAP16234 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC16.96■□□□□ 0.31
PDGFRAP16234 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
PDGFRAP16234 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
PDGFRAP16234 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
PDGFRAP16234 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC16.96■□□□□ 0.3
PDGFRAP16234 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC16.96■□□□□ 0.3
PDGFRAP16234 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
PDGFRAP16234 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC16.96■□□□□ 0.3
PDGFRAP16234 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.3
PDGFRAP16234 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
PDGFRAP16234 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PDGFRAP16234 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC16.95■□□□□ 0.3
PDGFRAP16234 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PDGFRAP16234 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PDGFRAP16234 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PDGFRAP16234 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PDGFRAP16234 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
PDGFRAP16234 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
PDGFRAP16234 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC16.95■□□□□ 0.3
PDGFRAP16234 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PDGFRAP16234 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PDGFRAP16234 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PDGFRAP16234 AC007950.2-201ENST00000615045 2347 ntBASIC16.95■□□□□ 0.3
PDGFRAP16234 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC16.95■□□□□ 0.3
PDGFRAP16234 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PDGFRAP16234 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC16.95■□□□□ 0.3
PDGFRAP16234 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
PDGFRAP16234 AC109322.1-201ENST00000524499 1264 ntBASIC16.95■□□□□ 0.3
PDGFRAP16234 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC16.95■□□□□ 0.3
PDGFRAP16234 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PDGFRAP16234 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC16.95■□□□□ 0.3
PDGFRAP16234 LINC00628-201ENST00000628516 1289 ntBASIC16.95■□□□□ 0.3
PDGFRAP16234 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC16.95■□□□□ 0.3
PDGFRAP16234 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC16.95■□□□□ 0.3
PDGFRAP16234 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms