Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC15.78■□□□□ 0.12
CCDC28BQ9BUN5 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC28BQ9BUN5 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC28BQ9BUN5 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
CCDC28BQ9BUN5 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC15.78■□□□□ 0.12
CCDC28BQ9BUN5 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC28BQ9BUN5 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC28BQ9BUN5 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC15.78■□□□□ 0.12
CCDC28BQ9BUN5 FGFR3P6-201ENST00000457012 610 ntBASIC15.78■□□□□ 0.12
CCDC28BQ9BUN5 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC15.78■□□□□ 0.12
CCDC28BQ9BUN5 RPS15P9-201ENST00000494093 319 ntBASIC15.78■□□□□ 0.12
CCDC28BQ9BUN5 MTRF1LP2-201ENST00000506027 1122 ntBASIC15.78■□□□□ 0.12
CCDC28BQ9BUN5 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC15.78■□□□□ 0.12
CCDC28BQ9BUN5 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC15.78■□□□□ 0.12
CCDC28BQ9BUN5 AC021097.1-201ENST00000607902 574 ntBASIC15.78■□□□□ 0.12
CCDC28BQ9BUN5 AL732292.2-201ENST00000609649 430 ntBASIC15.78■□□□□ 0.12
CCDC28BQ9BUN5 AC092119.3-201ENST00000612618 583 ntBASIC15.78■□□□□ 0.12
CCDC28BQ9BUN5 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC15.78■□□□□ 0.12
CCDC28BQ9BUN5 AP000550.4-202ENST00000639755 178 ntBASIC15.78■□□□□ 0.12
CCDC28BQ9BUN5 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC28BQ9BUN5 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
CCDC28BQ9BUN5 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC28BQ9BUN5 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC15.78■□□□□ 0.12
CCDC28BQ9BUN5 NORAD-201ENST00000565493 5339 ntBASIC15.78■□□□□ 0.12
CCDC28BQ9BUN5 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC28BQ9BUN5 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC28BQ9BUN5 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC28BQ9BUN5 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC15.78■□□□□ 0.12
CCDC28BQ9BUN5 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC28BQ9BUN5 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC28BQ9BUN5 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC28BQ9BUN5 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC15.78■□□□□ 0.12
CCDC28BQ9BUN5 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
CCDC28BQ9BUN5 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC28BQ9BUN5 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC28BQ9BUN5 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC15.78■□□□□ 0.12
CCDC28BQ9BUN5 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC28BQ9BUN5 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC28BQ9BUN5 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CCDC28BQ9BUN5 LINC00528-201ENST00000600723 2160 ntBASIC15.77■□□□□ 0.12
CCDC28BQ9BUN5 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
CCDC28BQ9BUN5 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC15.77■□□□□ 0.12
CCDC28BQ9BUN5 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CCDC28BQ9BUN5 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CCDC28BQ9BUN5 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
CCDC28BQ9BUN5 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
CCDC28BQ9BUN5 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CCDC28BQ9BUN5 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC15.77■□□□□ 0.12
CCDC28BQ9BUN5 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC15.77■□□□□ 0.12
CCDC28BQ9BUN5 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CCDC28BQ9BUN5 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CCDC28BQ9BUN5 CICP14-201ENST00000629111 2732 ntBASIC15.77■□□□□ 0.12
CCDC28BQ9BUN5 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC15.77■□□□□ 0.12
CCDC28BQ9BUN5 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
CCDC28BQ9BUN5 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CCDC28BQ9BUN5 AC007191.1-201ENST00000623179 2995 ntBASIC15.77■□□□□ 0.12
CCDC28BQ9BUN5 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
CCDC28BQ9BUN5 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
CCDC28BQ9BUN5 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC15.77■□□□□ 0.12
CCDC28BQ9BUN5 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
CCDC28BQ9BUN5 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
CCDC28BQ9BUN5 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
CCDC28BQ9BUN5 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CCDC28BQ9BUN5 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC15.77■□□□□ 0.12
CCDC28BQ9BUN5 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC15.77■□□□□ 0.12
CCDC28BQ9BUN5 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
CCDC28BQ9BUN5 LAGE3P1-201ENST00000425356 484 ntBASIC15.77■□□□□ 0.12
CCDC28BQ9BUN5 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
CCDC28BQ9BUN5 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
CCDC28BQ9BUN5 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC15.77■□□□□ 0.12
CCDC28BQ9BUN5 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
CCDC28BQ9BUN5 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC15.77■□□□□ 0.11
CCDC28BQ9BUN5 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC15.77■□□□□ 0.11
CCDC28BQ9BUN5 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
CCDC28BQ9BUN5 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CCDC28BQ9BUN5 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CCDC28BQ9BUN5 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
CCDC28BQ9BUN5 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
CCDC28BQ9BUN5 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
CCDC28BQ9BUN5 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC15.77■□□□□ 0.11
CCDC28BQ9BUN5 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
CCDC28BQ9BUN5 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC15.77■□□□□ 0.11
CCDC28BQ9BUN5 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC15.77■□□□□ 0.11
CCDC28BQ9BUN5 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CCDC28BQ9BUN5 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC15.77■□□□□ 0.11
CCDC28BQ9BUN5 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
CCDC28BQ9BUN5 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC28BQ9BUN5 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
CCDC28BQ9BUN5 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC28BQ9BUN5 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC28BQ9BUN5 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC28BQ9BUN5 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC28BQ9BUN5 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC15.76■□□□□ 0.11
CCDC28BQ9BUN5 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC28BQ9BUN5 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC28BQ9BUN5 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC15.76■□□□□ 0.11
CCDC28BQ9BUN5 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC28BQ9BUN5 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC15.76■□□□□ 0.11
CCDC28BQ9BUN5 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC28BQ9BUN5 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC15.76■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms