Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 AL096865.1-201ENST00000606796 927 ntBASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CLIP3Q96DZ5 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLIP3Q96DZ5 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLIP3Q96DZ5 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLIP3Q96DZ5 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC15.69■□□□□ 0.1
CLIP3Q96DZ5 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLIP3Q96DZ5 KRT8P39-201ENST00000396270 1433 ntBASIC15.69■□□□□ 0.1
CLIP3Q96DZ5 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CLIP3Q96DZ5 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC15.69■□□□□ 0.1
CLIP3Q96DZ5 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC15.69■□□□□ 0.1
CLIP3Q96DZ5 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLIP3Q96DZ5 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC15.69■□□□□ 0.1
CLIP3Q96DZ5 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC15.69■□□□□ 0.1
CLIP3Q96DZ5 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
CLIP3Q96DZ5 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC15.69■□□□□ 0.1
CLIP3Q96DZ5 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC15.69■□□□□ 0.1
CLIP3Q96DZ5 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC15.69■□□□□ 0.1
CLIP3Q96DZ5 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CLIP3Q96DZ5 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC15.69■□□□□ 0.1
CLIP3Q96DZ5 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CLIP3Q96DZ5 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
CLIP3Q96DZ5 DPM2-202ENST00000373110 738 ntTSL 2 BASIC15.69■□□□□ 0.1
CLIP3Q96DZ5 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLIP3Q96DZ5 BASP1P1-201ENST00000430708 665 ntBASIC15.69■□□□□ 0.1
CLIP3Q96DZ5 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC15.69■□□□□ 0.1
CLIP3Q96DZ5 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC15.69■□□□□ 0.1
CLIP3Q96DZ5 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC15.69■□□□□ 0.1
CLIP3Q96DZ5 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CLIP3Q96DZ5 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC15.69■□□□□ 0.1
CLIP3Q96DZ5 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC15.69■□□□□ 0.1
CLIP3Q96DZ5 AC140878.1-201ENST00000565277 250 ntBASIC15.69■□□□□ 0.1
CLIP3Q96DZ5 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC15.69■□□□□ 0.1
CLIP3Q96DZ5 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC15.69■□□□□ 0.1
CLIP3Q96DZ5 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC15.69■□□□□ 0.1
CLIP3Q96DZ5 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC15.69■□□□□ 0.1
CLIP3Q96DZ5 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC15.69■□□□□ 0.1
CLIP3Q96DZ5 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLIP3Q96DZ5 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC15.69■□□□□ 0.1
CLIP3Q96DZ5 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CLIP3Q96DZ5 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLIP3Q96DZ5 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CLIP3Q96DZ5 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLIP3Q96DZ5 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC15.69■□□□□ 0.1
CLIP3Q96DZ5 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLIP3Q96DZ5 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC15.68■□□□□ 0.1
CLIP3Q96DZ5 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLIP3Q96DZ5 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC15.68■□□□□ 0.1
CLIP3Q96DZ5 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLIP3Q96DZ5 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLIP3Q96DZ5 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC15.68■□□□□ 0.1
CLIP3Q96DZ5 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLIP3Q96DZ5 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
CLIP3Q96DZ5 CICP4-201ENST00000447359 2812 ntBASIC15.68■□□□□ 0.1
CLIP3Q96DZ5 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CLIP3Q96DZ5 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CLIP3Q96DZ5 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CLIP3Q96DZ5 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLIP3Q96DZ5 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC15.68■□□□□ 0.1
CLIP3Q96DZ5 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CLIP3Q96DZ5 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC15.68■□□□□ 0.1
CLIP3Q96DZ5 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CLIP3Q96DZ5 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLIP3Q96DZ5 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLIP3Q96DZ5 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLIP3Q96DZ5 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC15.68■□□□□ 0.1
CLIP3Q96DZ5 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CLIP3Q96DZ5 CENPM-205ENST00000404067 905 ntTSL 3 BASIC15.68■□□□□ 0.1
CLIP3Q96DZ5 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CLIP3Q96DZ5 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC15.68■□□□□ 0.1
CLIP3Q96DZ5 AC055876.3-201ENST00000431496 288 ntBASIC15.68■□□□□ 0.1
CLIP3Q96DZ5 BCRP1-201ENST00000444246 691 ntBASIC15.68■□□□□ 0.1
CLIP3Q96DZ5 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC15.68■□□□□ 0.1
CLIP3Q96DZ5 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC15.68■□□□□ 0.1
CLIP3Q96DZ5 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC15.68■□□□□ 0.1
CLIP3Q96DZ5 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC15.68■□□□□ 0.1
CLIP3Q96DZ5 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC15.68■□□□□ 0.1
CLIP3Q96DZ5 AC138649.4-201ENST00000612222 287 ntBASIC15.68■□□□□ 0.1
CLIP3Q96DZ5 AC003101.2-201ENST00000612557 442 ntBASIC15.68■□□□□ 0.1
CLIP3Q96DZ5 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms