Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TTC28Q96AY4 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TTC28Q96AY4 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TTC28Q96AY4 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC16.04■□□□□ 0.16
TTC28Q96AY4 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC16.04■□□□□ 0.16
TTC28Q96AY4 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
TTC28Q96AY4 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC16.04■□□□□ 0.16
TTC28Q96AY4 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
TTC28Q96AY4 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC16.04■□□□□ 0.16
TTC28Q96AY4 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC16.04■□□□□ 0.16
TTC28Q96AY4 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TTC28Q96AY4 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TTC28Q96AY4 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TTC28Q96AY4 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC16.04■□□□□ 0.16
TTC28Q96AY4 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC16.04■□□□□ 0.16
TTC28Q96AY4 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC16.04■□□□□ 0.16
TTC28Q96AY4 GPX4-206ENST00000588919 803 ntTSL 2 BASIC16.04■□□□□ 0.16
TTC28Q96AY4 AC051619.9-201ENST00000623237 597 ntBASIC16.04■□□□□ 0.16
TTC28Q96AY4 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
TTC28Q96AY4 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TTC28Q96AY4 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
TTC28Q96AY4 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC16.04■□□□□ 0.16
TTC28Q96AY4 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC16.04■□□□□ 0.16
TTC28Q96AY4 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC16.04■□□□□ 0.16
TTC28Q96AY4 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TTC28Q96AY4 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TTC28Q96AY4 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
TTC28Q96AY4 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
TTC28Q96AY4 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC16.03■□□□□ 0.16
TTC28Q96AY4 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC16.03■□□□□ 0.16
TTC28Q96AY4 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC16.03■□□□□ 0.16
TTC28Q96AY4 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
TTC28Q96AY4 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
TTC28Q96AY4 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
TTC28Q96AY4 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TTC28Q96AY4 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TTC28Q96AY4 AC004522.1-201ENST00000419978 654 ntBASIC16.03■□□□□ 0.16
TTC28Q96AY4 KRT18P64-201ENST00000434946 1219 ntBASIC16.03■□□□□ 0.16
TTC28Q96AY4 HDAC2-AS2-203ENST00000436876 591 ntTSL 5 BASIC16.03■□□□□ 0.16
TTC28Q96AY4 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC16.03■□□□□ 0.16
TTC28Q96AY4 AC053503.3-201ENST00000448375 114 ntBASIC16.03■□□□□ 0.16
TTC28Q96AY4 SNX11-210ENST00000582104 1282 ntTSL 2 BASIC16.03■□□□□ 0.16
TTC28Q96AY4 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC16.03■□□□□ 0.16
TTC28Q96AY4 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC16.03■□□□□ 0.16
TTC28Q96AY4 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
TTC28Q96AY4 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
TTC28Q96AY4 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC16.03■□□□□ 0.16
TTC28Q96AY4 U82695.1-201ENST00000635752 1889 ntBASIC16.03■□□□□ 0.16
TTC28Q96AY4 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC16.03■□□□□ 0.16
TTC28Q96AY4 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TTC28Q96AY4 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TTC28Q96AY4 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TTC28Q96AY4 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TTC28Q96AY4 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC16.03■□□□□ 0.16
TTC28Q96AY4 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
TTC28Q96AY4 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TTC28Q96AY4 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC16.03■□□□□ 0.16
TTC28Q96AY4 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TTC28Q96AY4 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
TTC28Q96AY4 AC122719.1-201ENST00000507989 559 ntTSL 4 BASIC16.03■□□□□ 0.16
TTC28Q96AY4 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC16.03■□□□□ 0.16
TTC28Q96AY4 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC16.03■□□□□ 0.16
TTC28Q96AY4 RPL17P45-201ENST00000586289 509 ntBASIC16.03■□□□□ 0.16
TTC28Q96AY4 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
TTC28Q96AY4 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC16.03■□□□□ 0.16
TTC28Q96AY4 AC020922.3-201ENST00000595064 547 ntBASIC16.03■□□□□ 0.16
TTC28Q96AY4 BNIP3P13-201ENST00000599968 566 ntBASIC16.03■□□□□ 0.16
TTC28Q96AY4 AC004686.1-201ENST00000605113 538 ntBASIC16.03■□□□□ 0.16
TTC28Q96AY4 AC104333.4-201ENST00000632866 554 ntTSL 3 BASIC16.03■□□□□ 0.16
TTC28Q96AY4 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
TTC28Q96AY4 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TTC28Q96AY4 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TTC28Q96AY4 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
TTC28Q96AY4 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
TTC28Q96AY4 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TTC28Q96AY4 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TTC28Q96AY4 EMP1-203ENST00000431267 1039 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
TTC28Q96AY4 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
TTC28Q96AY4 HNRNPA1P42-201ENST00000458678 957 ntBASIC16.02■□□□□ 0.16
TTC28Q96AY4 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC16.02■□□□□ 0.16
TTC28Q96AY4 AC012044.1-201ENST00000603431 297 ntBASIC16.02■□□□□ 0.16
TTC28Q96AY4 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
TTC28Q96AY4 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC16.02■□□□□ 0.15
TTC28Q96AY4 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
TTC28Q96AY4 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC16.02■□□□□ 0.15
TTC28Q96AY4 TPR-209ENST00000613151 2478 ntTSL 5 BASIC16.02■□□□□ 0.15
TTC28Q96AY4 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC16.02■□□□□ 0.15
TTC28Q96AY4 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
TTC28Q96AY4 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
TTC28Q96AY4 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
TTC28Q96AY4 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
TTC28Q96AY4 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
TTC28Q96AY4 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
TTC28Q96AY4 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC16.02■□□□□ 0.15
TTC28Q96AY4 RPL7P35-201ENST00000446943 740 ntBASIC16.02■□□□□ 0.15
TTC28Q96AY4 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC16.02■□□□□ 0.15
TTC28Q96AY4 SLED1-202ENST00000512051 380 ntBASIC16.02■□□□□ 0.15
TTC28Q96AY4 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC16.02■□□□□ 0.15
TTC28Q96AY4 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC16.02■□□□□ 0.15
TTC28Q96AY4 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC16.02■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms