Protein–RNA interactions for Protein: Q92544

TM9SF4, Transmembrane 9 superfamily member 4, humanhuman

Predictions only

Length 642 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4Q92544 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
TM9SF4Q92544 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC15.33■□□□□ 0.04
TM9SF4Q92544 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC15.33■□□□□ 0.04
TM9SF4Q92544 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TM9SF4Q92544 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
TM9SF4Q92544 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TM9SF4Q92544 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
TM9SF4Q92544 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
TM9SF4Q92544 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TM9SF4Q92544 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC15.32■□□□□ 0.04
TM9SF4Q92544 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
TM9SF4Q92544 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF4Q92544 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF4Q92544 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF4Q92544 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC15.32■□□□□ 0.04
TM9SF4Q92544 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF4Q92544 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF4Q92544 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF4Q92544 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF4Q92544 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF4Q92544 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
TM9SF4Q92544 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF4Q92544 PP14571-201ENST00000404327 934 ntTSL 2 BASIC15.32■□□□□ 0.04
TM9SF4Q92544 AC015922.1-201ENST00000421102 1152 ntBASIC15.32■□□□□ 0.04
TM9SF4Q92544 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF4Q92544 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC15.32■□□□□ 0.04
TM9SF4Q92544 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC15.32■□□□□ 0.04
TM9SF4Q92544 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC15.32■□□□□ 0.04
TM9SF4Q92544 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC15.32■□□□□ 0.04
TM9SF4Q92544 RN7SL204P-201ENST00000582831 262 ntBASIC15.32■□□□□ 0.04
TM9SF4Q92544 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC15.32■□□□□ 0.04
TM9SF4Q92544 SSH2-211ENST00000590153 570 ntTSL 4 BASIC15.32■□□□□ 0.04
TM9SF4Q92544 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC15.32■□□□□ 0.04
TM9SF4Q92544 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC15.32■□□□□ 0.04
TM9SF4Q92544 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF4Q92544 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC15.32■□□□□ 0.04
TM9SF4Q92544 HFE2-206ENST00000634927 506 ntTSL 4 BASIC15.32■□□□□ 0.04
TM9SF4Q92544 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF4Q92544 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC15.32■□□□□ 0.04
TM9SF4Q92544 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF4Q92544 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC15.32■□□□□ 0.04
TM9SF4Q92544 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF4Q92544 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
TM9SF4Q92544 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
TM9SF4Q92544 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF4Q92544 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC15.32■□□□□ 0.04
TM9SF4Q92544 SLC9A3P2-201ENST00000447821 2021 ntBASIC15.32■□□□□ 0.04
TM9SF4Q92544 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF4Q92544 AL365203.3-201ENST00000609742 2057 ntBASIC15.32■□□□□ 0.04
TM9SF4Q92544 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC15.32■□□□□ 0.04
TM9SF4Q92544 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF4Q92544 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
TM9SF4Q92544 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC15.32■□□□□ 0.04
TM9SF4Q92544 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF4Q92544 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
TM9SF4Q92544 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF4Q92544 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF4Q92544 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF4Q92544 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF4Q92544 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC15.32■□□□□ 0.04
TM9SF4Q92544 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
TM9SF4Q92544 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC15.31■□□□□ 0.04
TM9SF4Q92544 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC15.31■□□□□ 0.04
TM9SF4Q92544 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TM9SF4Q92544 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC15.31■□□□□ 0.04
TM9SF4Q92544 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
TM9SF4Q92544 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TM9SF4Q92544 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TM9SF4Q92544 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC15.31■□□□□ 0.04
TM9SF4Q92544 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TM9SF4Q92544 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC15.31■□□□□ 0.04
TM9SF4Q92544 MYB-201ENST00000316528 3571 ntTSL 5 BASIC15.31■□□□□ 0.04
TM9SF4Q92544 MYB-241ENST00000616088 3573 ntTSL 5 BASIC15.31■□□□□ 0.04
TM9SF4Q92544 AC068418.2-201ENST00000577309 3703 ntBASIC15.31■□□□□ 0.04
TM9SF4Q92544 COPE-202ENST00000349893 948 ntTSL 2 BASIC15.31■□□□□ 0.04
TM9SF4Q92544 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC15.31■□□□□ 0.04
TM9SF4Q92544 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC15.31■□□□□ 0.04
TM9SF4Q92544 PPP6R2P1-201ENST00000450880 1275 ntBASIC15.31■□□□□ 0.04
TM9SF4Q92544 AC097493.3-201ENST00000509725 367 ntBASIC15.31■□□□□ 0.04
TM9SF4Q92544 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC15.31■□□□□ 0.04
TM9SF4Q92544 RBM7-207ENST00000544582 692 ntTSL 3 BASIC15.31■□□□□ 0.04
TM9SF4Q92544 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC15.31■□□□□ 0.04
TM9SF4Q92544 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
TM9SF4Q92544 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC15.31■□□□□ 0.04
TM9SF4Q92544 CYP2A7P1-201ENST00000595391 815 ntBASIC15.31■□□□□ 0.04
TM9SF4Q92544 LINC02560-201ENST00000596379 459 ntBASIC15.31■□□□□ 0.04
TM9SF4Q92544 AC012645.4-201ENST00000610691 1061 ntBASIC15.31■□□□□ 0.04
TM9SF4Q92544 AC073592.8-201ENST00000624126 511 ntBASIC15.31■□□□□ 0.04
TM9SF4Q92544 AL035252.4-201ENST00000624174 288 ntBASIC15.31■□□□□ 0.04
TM9SF4Q92544 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC15.31■□□□□ 0.04
TM9SF4Q92544 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TM9SF4Q92544 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TM9SF4Q92544 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TM9SF4Q92544 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC15.31■□□□□ 0.04
TM9SF4Q92544 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TM9SF4Q92544 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC15.31■□□□□ 0.04
TM9SF4Q92544 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TM9SF4Q92544 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TM9SF4Q92544 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
TM9SF4Q92544 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms