Protein–RNA interactions for Protein: P43681

CHRNA4, Neuronal acetylcholine receptor subunit alpha-4, humanhuman

Predictions only

Length 627 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4P43681 AC023511.2-201ENST00000618803 211 ntBASIC16.33■□□□□ 0.2
CHRNA4P43681 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC16.33■□□□□ 0.2
CHRNA4P43681 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
CHRNA4P43681 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC16.33■□□□□ 0.2
CHRNA4P43681 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
CHRNA4P43681 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CHRNA4P43681 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
CHRNA4P43681 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC16.33■□□□□ 0.2
CHRNA4P43681 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
CHRNA4P43681 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
CHRNA4P43681 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CHRNA4P43681 AP3S2-216ENST00000617003 1561 ntBASIC16.33■□□□□ 0.2
CHRNA4P43681 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CHRNA4P43681 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
CHRNA4P43681 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
CHRNA4P43681 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC16.33■□□□□ 0.2
CHRNA4P43681 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CHRNA4P43681 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CHRNA4P43681 AC134407.2-201ENST00000625089 1978 ntBASIC16.33■□□□□ 0.2
CHRNA4P43681 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
CHRNA4P43681 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CHRNA4P43681 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC16.33■□□□□ 0.2
CHRNA4P43681 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC16.33■□□□□ 0.2
CHRNA4P43681 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC16.33■□□□□ 0.2
CHRNA4P43681 AC046158.3-201ENST00000624947 2558 ntBASIC16.33■□□□□ 0.2
CHRNA4P43681 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CHRNA4P43681 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CHRNA4P43681 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
CHRNA4P43681 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
CHRNA4P43681 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CHRNA4P43681 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC16.32■□□□□ 0.2
CHRNA4P43681 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
CHRNA4P43681 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
CHRNA4P43681 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC16.32■□□□□ 0.2
CHRNA4P43681 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC16.32■□□□□ 0.2
CHRNA4P43681 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CHRNA4P43681 HLA-H-201ENST00000383620 1096 ntBASIC16.32■□□□□ 0.2
CHRNA4P43681 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CHRNA4P43681 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CHRNA4P43681 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC16.32■□□□□ 0.2
CHRNA4P43681 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC16.32■□□□□ 0.2
CHRNA4P43681 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC16.32■□□□□ 0.2
CHRNA4P43681 AP000344.2-201ENST00000512987 629 ntBASIC16.32■□□□□ 0.2
CHRNA4P43681 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC16.32■□□□□ 0.2
CHRNA4P43681 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CHRNA4P43681 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC16.32■□□□□ 0.2
CHRNA4P43681 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC16.32■□□□□ 0.2
CHRNA4P43681 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC16.32■□□□□ 0.2
CHRNA4P43681 TSFM-210ENST00000550559 897 ntTSL 5 BASIC16.32■□□□□ 0.2
CHRNA4P43681 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CHRNA4P43681 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
CHRNA4P43681 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC16.32■□□□□ 0.2
CHRNA4P43681 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC16.32■□□□□ 0.2
CHRNA4P43681 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC16.32■□□□□ 0.2
CHRNA4P43681 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC16.32■□□□□ 0.2
CHRNA4P43681 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC16.32■□□□□ 0.2
CHRNA4P43681 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC16.32■□□□□ 0.2
CHRNA4P43681 HYMAI-201ENST00000635591 3347 ntBASIC16.32■□□□□ 0.2
CHRNA4P43681 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
CHRNA4P43681 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
CHRNA4P43681 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CHRNA4P43681 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CHRNA4P43681 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CHRNA4P43681 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC16.32■□□□□ 0.2
CHRNA4P43681 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CHRNA4P43681 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CHRNA4P43681 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
CHRNA4P43681 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CHRNA4P43681 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CHRNA4P43681 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHRNA4P43681 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHRNA4P43681 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
CHRNA4P43681 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHRNA4P43681 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
CHRNA4P43681 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHRNA4P43681 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHRNA4P43681 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHRNA4P43681 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CHRNA4P43681 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC16.31■□□□□ 0.2
CHRNA4P43681 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHRNA4P43681 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHRNA4P43681 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CHRNA4P43681 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHRNA4P43681 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CHRNA4P43681 CD81-202ENST00000381036 880 ntTSL 3 BASIC16.31■□□□□ 0.2
CHRNA4P43681 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHRNA4P43681 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CHRNA4P43681 GPS2P2-201ENST00000430745 888 ntBASIC16.31■□□□□ 0.2
CHRNA4P43681 AC245100.5-201ENST00000452108 331 ntBASIC16.31■□□□□ 0.2
CHRNA4P43681 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
CHRNA4P43681 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC16.31■□□□□ 0.2
CHRNA4P43681 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC16.31■□□□□ 0.2
CHRNA4P43681 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC16.31■□□□□ 0.2
CHRNA4P43681 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC16.31■□□□□ 0.2
CHRNA4P43681 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
CHRNA4P43681 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC16.31■□□□□ 0.2
CHRNA4P43681 AC004835.2-201ENST00000603762 682 ntBASIC16.31■□□□□ 0.2
CHRNA4P43681 AL596442.2-201ENST00000610240 980 ntBASIC16.31■□□□□ 0.2
CHRNA4P43681 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHRNA4P43681 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms