Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SOX3P41225 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC15.28■□□□□ 0.04
SOX3P41225 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC15.28■□□□□ 0.04
SOX3P41225 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SOX3P41225 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SOX3P41225 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
SOX3P41225 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
SOX3P41225 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SOX3P41225 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
SOX3P41225 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SOX3P41225 AC104640.1-201ENST00000562617 2109 ntBASIC15.28■□□□□ 0.04
SOX3P41225 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
SOX3P41225 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC15.28■□□□□ 0.04
SOX3P41225 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
SOX3P41225 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
SOX3P41225 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SOX3P41225 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SOX3P41225 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SOX3P41225 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SOX3P41225 CBR1-202ENST00000399191 838 ntTSL 3 BASIC15.28■□□□□ 0.04
SOX3P41225 KRT18P32-201ENST00000424695 1287 ntBASIC15.28■□□□□ 0.04
SOX3P41225 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC15.28■□□□□ 0.04
SOX3P41225 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SOX3P41225 KRT18P34-201ENST00000488218 1270 ntBASIC15.28■□□□□ 0.04
SOX3P41225 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC15.28■□□□□ 0.04
SOX3P41225 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC15.28■□□□□ 0.04
SOX3P41225 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC15.28■□□□□ 0.04
SOX3P41225 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC15.28■□□□□ 0.04
SOX3P41225 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
SOX3P41225 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
SOX3P41225 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC15.28■□□□□ 0.04
SOX3P41225 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC15.28■□□□□ 0.04
SOX3P41225 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC15.28■□□□□ 0.04
SOX3P41225 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
SOX3P41225 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SOX3P41225 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC15.28■□□□□ 0.04
SOX3P41225 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
SOX3P41225 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SOX3P41225 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC15.28■□□□□ 0.04
SOX3P41225 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SOX3P41225 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC15.28■□□□□ 0.04
SOX3P41225 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SOX3P41225 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SOX3P41225 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SOX3P41225 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SOX3P41225 NARF-206ENST00000457415 1668 ntTSL 5 BASIC15.28■□□□□ 0.04
SOX3P41225 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
SOX3P41225 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SOX3P41225 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SOX3P41225 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
SOX3P41225 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC15.27■□□□□ 0.04
SOX3P41225 UXT-AS1-201ENST00000590504 1525 ntBASIC15.27■□□□□ 0.04
SOX3P41225 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SOX3P41225 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SOX3P41225 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC15.27■□□□□ 0.04
SOX3P41225 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
SOX3P41225 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SOX3P41225 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
SOX3P41225 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
SOX3P41225 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
SOX3P41225 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
SOX3P41225 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SOX3P41225 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SOX3P41225 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC15.27■□□□□ 0.04
SOX3P41225 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC15.27■□□□□ 0.04
SOX3P41225 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC15.27■□□□□ 0.04
SOX3P41225 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.04
SOX3P41225 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC15.27■□□□□ 0.04
SOX3P41225 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC15.27■□□□□ 0.04
SOX3P41225 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
SOX3P41225 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
SOX3P41225 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
SOX3P41225 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SOX3P41225 AL139400.1-201ENST00000366220 510 ntBASIC15.27■□□□□ 0.04
SOX3P41225 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SOX3P41225 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC15.27■□□□□ 0.04
SOX3P41225 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC15.27■□□□□ 0.04
SOX3P41225 PON3-203ENST00000427422 894 ntTSL 3 BASIC15.27■□□□□ 0.04
SOX3P41225 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC15.27■□□□□ 0.04
SOX3P41225 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SOX3P41225 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC15.27■□□□□ 0.04
SOX3P41225 DAD1-205ENST00000543337 501 ntTSL 3 BASIC15.27■□□□□ 0.04
SOX3P41225 TSFM-210ENST00000550559 897 ntTSL 5 BASIC15.27■□□□□ 0.04
SOX3P41225 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC15.27■□□□□ 0.04
SOX3P41225 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SOX3P41225 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SOX3P41225 AC009093.7-201ENST00000623853 1223 ntBASIC15.27■□□□□ 0.04
SOX3P41225 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC15.27■□□□□ 0.04
SOX3P41225 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.03
SOX3P41225 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
SOX3P41225 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
SOX3P41225 MTHFR-217ENST00000641820 1569 ntBASIC15.27■□□□□ 0.03
SOX3P41225 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SOX3P41225 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC15.27■□□□□ 0.03
SOX3P41225 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
SOX3P41225 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
SOX3P41225 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
SOX3P41225 VILL-207ENST00000465644 1857 ntTSL 5 BASIC15.27■□□□□ 0.03
SOX3P41225 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC15.27■□□□□ 0.03
SOX3P41225 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms