Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
NPHP1O15259 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
NPHP1O15259 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC20.35■□□□□ 0.85
NPHP1O15259 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC20.35■□□□□ 0.85
NPHP1O15259 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC20.35■□□□□ 0.85
NPHP1O15259 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
NPHP1O15259 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC20.35■□□□□ 0.85
NPHP1O15259 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC20.35■□□□□ 0.85
NPHP1O15259 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
NPHP1O15259 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NPHP1O15259 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
NPHP1O15259 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
NPHP1O15259 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
NPHP1O15259 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NPHP1O15259 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC20.35■□□□□ 0.85
NPHP1O15259 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
NPHP1O15259 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NPHP1O15259 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NPHP1O15259 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NPHP1O15259 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
NPHP1O15259 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
NPHP1O15259 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
NPHP1O15259 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
NPHP1O15259 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
NPHP1O15259 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
NPHP1O15259 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC20.34■□□□□ 0.85
NPHP1O15259 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
NPHP1O15259 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
NPHP1O15259 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
NPHP1O15259 FADS2-205ENST00000517839 469 ntTSL 3 BASIC20.34■□□□□ 0.85
NPHP1O15259 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC20.34■□□□□ 0.85
NPHP1O15259 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC20.34■□□□□ 0.85
NPHP1O15259 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC20.34■□□□□ 0.85
NPHP1O15259 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC20.34■□□□□ 0.85
NPHP1O15259 CLK3P2-201ENST00000427566 1453 ntBASIC20.34■□□□□ 0.85
NPHP1O15259 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
NPHP1O15259 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
NPHP1O15259 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
NPHP1O15259 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC20.34■□□□□ 0.85
NPHP1O15259 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC20.34■□□□□ 0.85
NPHP1O15259 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
NPHP1O15259 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
NPHP1O15259 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
NPHP1O15259 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NPHP1O15259 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
NPHP1O15259 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NPHP1O15259 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
NPHP1O15259 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NPHP1O15259 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NPHP1O15259 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
NPHP1O15259 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
NPHP1O15259 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
NPHP1O15259 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
NPHP1O15259 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC20.33■□□□□ 0.85
NPHP1O15259 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
NPHP1O15259 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
NPHP1O15259 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
NPHP1O15259 HIST1H2BPS3-201ENST00000419683 341 ntBASIC20.33■□□□□ 0.85
NPHP1O15259 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
NPHP1O15259 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC20.33■□□□□ 0.85
NPHP1O15259 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
NPHP1O15259 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
NPHP1O15259 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC20.33■□□□□ 0.85
NPHP1O15259 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC20.33■□□□□ 0.85
NPHP1O15259 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC20.33■□□□□ 0.85
NPHP1O15259 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC20.33■□□□□ 0.85
NPHP1O15259 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
NPHP1O15259 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
NPHP1O15259 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
NPHP1O15259 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
NPHP1O15259 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
NPHP1O15259 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC20.33■□□□□ 0.84
NPHP1O15259 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
NPHP1O15259 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
NPHP1O15259 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
NPHP1O15259 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC20.33■□□□□ 0.84
NPHP1O15259 AL031731.1-201ENST00000642131 2094 ntBASIC20.33■□□□□ 0.84
NPHP1O15259 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
NPHP1O15259 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
NPHP1O15259 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC20.33■□□□□ 0.84
NPHP1O15259 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
NPHP1O15259 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
NPHP1O15259 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
NPHP1O15259 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
NPHP1O15259 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
NPHP1O15259 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.84
NPHP1O15259 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP1O15259 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP1O15259 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP1O15259 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP1O15259 AC084018.2-201ENST00000613093 2607 ntBASIC20.32■□□□□ 0.84
NPHP1O15259 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC20.32■□□□□ 0.84
NPHP1O15259 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP1O15259 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP1O15259 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP1O15259 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
NPHP1O15259 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP1O15259 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP1O15259 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC20.32■□□□□ 0.84
NPHP1O15259 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 60.3 ms