Protein–RNA interactions for Protein: Q9UDT6

CLIP2, CAP-Gly domain-containing linker protein 2, humanhuman

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2Q9UDT6 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
CLIP2Q9UDT6 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
CLIP2Q9UDT6 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC19.22■□□□□ 0.67
CLIP2Q9UDT6 INGX-202ENST00000489074 768 ntBASIC19.22■□□□□ 0.67
CLIP2Q9UDT6 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC19.22■□□□□ 0.67
CLIP2Q9UDT6 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CLIP2Q9UDT6 RNA5SP410-201ENST00000516285 106 ntBASIC19.22■□□□□ 0.67
CLIP2Q9UDT6 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC19.22■□□□□ 0.67
CLIP2Q9UDT6 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC19.22■□□□□ 0.67
CLIP2Q9UDT6 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC19.22■□□□□ 0.67
CLIP2Q9UDT6 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CLIP2Q9UDT6 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC19.22■□□□□ 0.67
CLIP2Q9UDT6 AL158211.3-201ENST00000607385 239 ntBASIC19.22■□□□□ 0.67
CLIP2Q9UDT6 AL390754.1-201ENST00000619088 582 ntBASIC19.22■□□□□ 0.67
CLIP2Q9UDT6 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC19.22■□□□□ 0.67
CLIP2Q9UDT6 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
CLIP2Q9UDT6 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CLIP2Q9UDT6 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
CLIP2Q9UDT6 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CLIP2Q9UDT6 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC19.22■□□□□ 0.67
CLIP2Q9UDT6 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
CLIP2Q9UDT6 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CLIP2Q9UDT6 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC19.22■□□□□ 0.67
CLIP2Q9UDT6 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CLIP2Q9UDT6 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
CLIP2Q9UDT6 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC19.22■□□□□ 0.67
CLIP2Q9UDT6 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CLIP2Q9UDT6 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CLIP2Q9UDT6 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
CLIP2Q9UDT6 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CLIP2Q9UDT6 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC19.21■□□□□ 0.67
CLIP2Q9UDT6 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CLIP2Q9UDT6 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC19.21■□□□□ 0.67
CLIP2Q9UDT6 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CLIP2Q9UDT6 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
CLIP2Q9UDT6 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CLIP2Q9UDT6 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CLIP2Q9UDT6 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CLIP2Q9UDT6 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC19.21■□□□□ 0.67
CLIP2Q9UDT6 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC19.21■□□□□ 0.67
CLIP2Q9UDT6 AC092580.3-201ENST00000430932 139 ntBASIC19.21■□□□□ 0.67
CLIP2Q9UDT6 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC19.21■□□□□ 0.67
CLIP2Q9UDT6 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC19.21■□□□□ 0.67
CLIP2Q9UDT6 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC19.21■□□□□ 0.67
CLIP2Q9UDT6 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC19.21■□□□□ 0.67
CLIP2Q9UDT6 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC19.21■□□□□ 0.67
CLIP2Q9UDT6 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC19.21■□□□□ 0.67
CLIP2Q9UDT6 AC007967.4-201ENST00000614700 386 ntBASIC19.21■□□□□ 0.67
CLIP2Q9UDT6 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
CLIP2Q9UDT6 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CLIP2Q9UDT6 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CLIP2Q9UDT6 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
CLIP2Q9UDT6 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CLIP2Q9UDT6 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CLIP2Q9UDT6 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CLIP2Q9UDT6 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
CLIP2Q9UDT6 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC19.21■□□□□ 0.67
CLIP2Q9UDT6 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CLIP2Q9UDT6 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC19.21■□□□□ 0.66
CLIP2Q9UDT6 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLIP2Q9UDT6 AC092364.2-201ENST00000596710 2692 ntBASIC19.2■□□□□ 0.66
CLIP2Q9UDT6 HLA-A-202ENST00000376806 1854 ntBASIC19.2■□□□□ 0.66
CLIP2Q9UDT6 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CLIP2Q9UDT6 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC19.2■□□□□ 0.66
CLIP2Q9UDT6 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CLIP2Q9UDT6 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLIP2Q9UDT6 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
CLIP2Q9UDT6 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
CLIP2Q9UDT6 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLIP2Q9UDT6 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLIP2Q9UDT6 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLIP2Q9UDT6 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
CLIP2Q9UDT6 VMA21-202ENST00000370361 693 ntTSL 5 BASIC19.2■□□□□ 0.66
CLIP2Q9UDT6 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CLIP2Q9UDT6 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC19.2■□□□□ 0.66
CLIP2Q9UDT6 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC19.2■□□□□ 0.66
CLIP2Q9UDT6 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CLIP2Q9UDT6 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CLIP2Q9UDT6 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLIP2Q9UDT6 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC19.2■□□□□ 0.66
CLIP2Q9UDT6 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLIP2Q9UDT6 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC19.2■□□□□ 0.66
CLIP2Q9UDT6 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC19.2■□□□□ 0.66
CLIP2Q9UDT6 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC19.2■□□□□ 0.66
CLIP2Q9UDT6 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CLIP2Q9UDT6 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLIP2Q9UDT6 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLIP2Q9UDT6 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLIP2Q9UDT6 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLIP2Q9UDT6 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLIP2Q9UDT6 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC19.2■□□□□ 0.66
CLIP2Q9UDT6 PCGF3-213ENST00000620529 1899 ntBASIC19.2■□□□□ 0.66
CLIP2Q9UDT6 AL589702.1-201ENST00000641229 1509 ntBASIC19.2■□□□□ 0.66
CLIP2Q9UDT6 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
CLIP2Q9UDT6 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC19.2■□□□□ 0.66
CLIP2Q9UDT6 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC19.19■□□□□ 0.66
CLIP2Q9UDT6 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLIP2Q9UDT6 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLIP2Q9UDT6 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CLIP2Q9UDT6 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms